1887

Abstract

The sequence of the 3585 nucleotides [excluding the 3′ poly(A) tail] of barley yellow mosaic virus (BaYMV) RNA 2 was obtained by analysis of cDNA clones and by direct RNA sequencing. The first initiation codon at nucleotide 155 was followed by a single long open reading frame encoding a protein of 890 amino acids with an of 98458. Amino acid sequence comparisons indicated that the BaYMV 98K protein contains a region similar to the C-terminal proteinase domain of the potyvirus helper component (HC) protein towards its N terminus, but that it has no sequences that resemble the N-terminal part of the HC protein or other proteins of potyviruses. The data reveal striking differences in genetic organization between BaYMV RNA 2 and the 5′-terminal region of the potyvirus genome, despite a close genetic relationship between BaYMV RNA 1 and the rest of the potyvirus genome.

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1991-04-01
2024-04-16
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References

  1. Allison R., Johnston R. E., Dougherty W. G. 1986; The nucleotide sequence of the coding region of tobacco etch virus genomic RNA; evidence for the synthesis of a single polyprotein. Virology 154:9–20
    [Google Scholar]
  2. Asamizu T., Summers D., Motika M. B., Anzola J. V., Nuss D. L. 1985; Molecular cloning and characterization of the genome of wound tumor virus: a tumor-inducing plant reovirus. Virology 144:398–409
    [Google Scholar]
  3. Bouzoubaa S., Quillet L., Guilley H., Jonard G., Richards K. 1987; Nucleotide sequence of beet necrotic yellow vein virus RNA-1. Journal of General Virology 68:615–626
    [Google Scholar]
  4. Carrington J. C., Cary S. M., Parks T. D., Dougherty W. G. 1989a; A second proteinase encoded by a plant potyvirus genome. EMBO Journal 8:365–370
    [Google Scholar]
  5. Carrington J. C., Freed D. D., Sanders T. C. 1989b; Autocatalytic processing of the potyvirus helper component proteinase in Escherichia coli and in vitro . Journal of Virology 63:4459–4463
    [Google Scholar]
  6. Cornelissen B. J. C., Linthorst H. J. M., Brederode F. T., Bol J. F. 1986; Analysis of the genome structure of tobacco rattle virus strain PSG. Nucleic Acids Research 14:2157–2169
    [Google Scholar]
  7. Davidson A. D., Prӧls M., Schell J., Steinbiss H.-H. 1991; The nucleotide sequence of RNA 2 of barley yellow mosaic virus. Journal of General Virology 72:989–993
    [Google Scholar]
  8. Davies J. W., Stanley J., van Kammen A. 1979; Sequence homology adjacent to the 3′ terminal poly(A) of cowpea mosaic virus RNAs. Nucleic Acids Research 7:493–500
    [Google Scholar]
  9. Dodd S. M., Robinson D. J. 1987; Conservation of the 3′-terminal sequences of the genome RNA species of tomato black ring virus. Journal of General Virology 68:973–978
    [Google Scholar]
  10. Domier L. L., Franklin K. M., Shahabuddin M., Hellmann G. M., Overmeyer J. M., Hiremath S. T., Siaw M. F. E., Lomonossoff G. P., Shaw J. G., Rhoads R. E. 1986; The nucleotide sequence of tobacco vein mottling virus RNA. Nucleic Acids Research 14:5417–5430
    [Google Scholar]
  11. Domier L. L., Shaw J. G., Rhoads R. E. 1987; Potyviral proteins share amino acid sequence homology with picoma-, como-, and caulimoviral proteins. Virology 158:20–27
    [Google Scholar]
  12. Dougherty W. G., Carrington J. C. 1988; Expression and function of potyviral gene products. Annual Review of Phytopathology 26:2775–2783
    [Google Scholar]
  13. Elleman T. C., Hoyne P. A., Dyall-Smith M. L., Holmes I. H., Azad A. A. 1983; Nucleotide sequence of the gene encoding the serotype-specific glycoprotein of UK bovine rotavirus. Nucleic Acids Research 11:4689–4701
    [Google Scholar]
  14. Greif C., Hemmer O., Fritsch C. 1988; Nucleotide sequence of tomato black ring virus RNA-1. Journal of General Virology 69:1517–1529
    [Google Scholar]
  15. Inouye T., Saito Y. 1975; Barley yellow mosaic virus. CMI/AAB Descriptions of Plant Viruses no 143
    [Google Scholar]
  16. Kashiwazaki S., Hayano Y., Minobe Y., Omura T., Hibino H., Tsuchizaki T. 1989a; Nucleotide sequence of the capsid protein gene of barley yellow mosaic virus. Journal of General Virology 70:3015–3023
    [Google Scholar]
  17. Kashiwazaki S., Ogawa K., Usugi T., Omura T., Tsuchizaki T. 1989b; Characterization of several strains of barley yellow mosaic virus. Annals of the Phytopathological Society of Japan 55:16–25
    [Google Scholar]
  18. Kashiwazaki S., Minobe Y., Omura T., Hibino H. 1990; Nucleotide sequence of barley yellow mosaic virus RNA 1: a close evolutionary relationship with potyviruses. Journal of General Virology 71:2781–2790
    [Google Scholar]
  19. Lomonossoff G., Shanks M. 1983; The nucleotide sequence of cowpea mosaic virus B RNA. EMBO Journal 2:2253–2258
    [Google Scholar]
  20. Lutcke H. A., Chow K. C., Mickel F. S., Moss K. A., Kern H. F., Scheele G. A. 1987; Selection of AUG initiation codons differs in plants and animals. EMBO Journal 6:43–48
    [Google Scholar]
  21. Maiss E., Timpe U., Brisske A., Jelkmann W., Casper R., Himmler G., Mattanovich D., Katinger H. W. D. 1989; The complete nucleotide sequence of plum pox virus RNA. Journal of General Virology 70:513–524
    [Google Scholar]
  22. Nevins J. R. 1983; The pathway of eukaryotic mRNA formation. Annual Review of Biochemistry 52:441–466
    [Google Scholar]
  23. Oh C.-S., Carrington J. C. 1989; Identification of essential residues in potyvirus proteinase HC-Pro by site-directed mutagenesis. Virology 173:692–699
    [Google Scholar]
  24. Rezaian M. A., Williams R. H. V., Symons R. H. 1985; Nucleotide sequence of cucumber mosaic virus RNA 1. European Journal of Biochemistry 150:331–339
    [Google Scholar]
  25. Robaglia C., Durand-Tardif M., Tronchet M., Boudazin G., Astier-Manifacier S., Casse-Delbart F. 1989; Nucleotide sequence of potato virus Y (N strain) genomic RNA. Journal of General Virology 70:935–947
    [Google Scholar]
  26. Sanger F., Nicklen S., Coulson A. R. 1977; DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences, U.S.A 74:5463–5467
    [Google Scholar]
  27. Usugi T., Saito Y. 1976; Purification and serological properties of barley yellow mosaic virus and wheat yellow mosaic virus. Annals of the Phytopathological Society of Japan 42:12–20
    [Google Scholar]
  28. Usugi T., Kashiwazaki S., Omura T., Tsuchizaki T. 1989; Some properties of nucleic acids and coat proteins of soil-borne filamentous viruses. Annals of the Phytopathological Society of Japan 55:26–31
    [Google Scholar]
  29. Xiong Z., Lommel S. A. 1989; The complete nucleotide sequence and genome organization of red clover necrotic mosaic virus RNA-1. Virology 171:543–554
    [Google Scholar]
  30. Zaret K. S., Sherman F. 1982; DNA sequence required for efficient transcription termination in yeast. Cell 28:563–573
    [Google Scholar]
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