Genetic diversity of currently circulating rubella viruses: a need to define more precise viral groups

References

1. Icenogle JP, Frey TK, Abernathy E, Reef SE, Schnurr D et al. Genetic analysis of rubella viruses found in the United States between 1966 and 2004: evidence that indigenous rubella viruses have been eliminated. Clin Infect Dis 2006; 43:S133–S140 [View Article][PubMed]
   [Google Scholar]
2. World Health Organization Standardization of the nomenclature for genetic characteristics of wild-type rubella viruses. Wkly Epidemiol Rec 2005; 80:126–132[PubMed]
   [Google Scholar]
3. World Health Organization Update of standard nomenclature for wild-type rubella viruses, 2007=Nomenclature normalisée des virus rubéoleux de type sauvage—mise à jour 2007. Wkly Epidemiol Rec 2007; 82:216–222[PubMed]
   [Google Scholar]
4. World Health Organization Rubella virus nomenclature update: 2013. Wkly Epidemiol Rec 2013; 88:337–343[PubMed]
   [Google Scholar]
5. Abernathy E, Chen MH, Bera J, Shrivastava S, Kirkness E et al. Analysis of whole genome sequences of 16 strains of rubella virus from the United States, 1961–2009. Virol J 2013; 10:32 [View Article][PubMed]
   [Google Scholar]
6. Zhou Y, Ushijima H, Frey TK. Genomic analysis of diverse rubella virus genotypes. J Gen Virol 2007; 88:932–941 [View Article][PubMed]
   [Google Scholar]
7. Zhu Z, Chen MH, Abernathy E, Zhou S, Wang C et al. Genomic analysis of the Chinese genotype 1F rubella virus that disappeared after 2002 in China. J Med Virol 2014; 86:2114–2121 [View Article][PubMed]
   [Google Scholar]
8. Abernathy ES, Hübschen JM, Muller CP, Jin L, Brown D et al. Status of global virologic surveillance for rubella viruses. J Infect Dis 2011; 204:S524–S532 [View Article][PubMed]
   [Google Scholar]
9. Zhu Z, Abernathy E, Cui A, Zhang Y, Zhou S et al. Rubella virus genotypes in the People's Republic of China between 1979 and 2007: a shift in endemic viruses during the 2001 rubella epidemic. J Clin Microbiol 2010; 48:1775–1781 [View Article][PubMed]
   [Google Scholar]
10. Goodson JL, Masresha B, Dosseh A, Byabamazima C, Nshimirimana D et al. Rubella epidemiology in Africa in the prevaccine era, 2002–2009. J Infect Dis 2011; 204:S215–S225 [View Article][PubMed]
    [Google Scholar]
11. Namuwulya P, Abernathy E, Bukenya H, Bwogi J, Tushabe P et al. Phylogenetic analysis of rubella viruses identified in Uganda, 2003–2012. J Med Virol 2014; 86:2107–2113 [View Article][PubMed]
    [Google Scholar]
12. Zhu Z, Rivailler P, Abernathy E, Cui A, Zhang Y et al. Evolutionary analysis of rubella viruses in mainland China during 2010–2012: endemic circulation of genotype 1E and introductions of genotype 2B. Sci Rep 2015; 5:7999 [View Article][PubMed]
    [Google Scholar]
13. Tran DN, Pham NT, Tran TT, Khamrin P, Thongprachum A et al. Phylogenetic analysis of rubella viruses in Vietnam during 2009–2010. J Med Virol 2012; 84:705–710 [View Article][PubMed]
    [Google Scholar]
14. Cheng WY, Wang HC, Liu MT, Wu HS. Molecular surveillance of rubella viruses in Taiwan from 2005 to 2011. J Med Virol 2013; 85:745–753 [View Article][PubMed]
    [Google Scholar]
15. Zhu Z, Cui A, Wang H, Zhang Y, Liu C et al. Emergence and continuous evolution of genotype 1E rubella viruses in China. J Clin Microbiol 2012; 50:353–363 [View Article][PubMed]
    [Google Scholar]
16. Mantel N. The detection of disease clustering and a generalized regression approach. Cancer Res 1967; 27:209–220[PubMed]
    [Google Scholar]
17. Mulders MN, Rota PA, Icenogle JP, Brown KE, Takeda M et al. Global Measles and Rubella Laboratory Network support for elimination goals, 2010–2015. MMWR Morb Mortal Wkly Rep 2016; 65:438–442 [View Article][PubMed]
    [Google Scholar]
18. Reisman S, Hatzopoulos T, Läufer K, Thiruvathuka GK, Putonti C. Polyglot approach to bioinformatics data integration: a phylogenetic analysis of HIV-1. Evol Bioinform 2016; 12:23–27 [View Article]
    [Google Scholar]
19. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004; 32:1792–1797 [View Article][PubMed]
    [Google Scholar]
20. Kumar S, Tamura K, Nei M. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 2004; 5:150–163[PubMed] [Crossref]
    [Google Scholar]
21. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425[PubMed]
    [Google Scholar]
22. Tamura K, Peterson D, Peterson N, Stecher G, Nei M et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011; 28:2731–2739 [View Article][PubMed]
    [Google Scholar]
23. Smith GJ, Donis RO. Nomenclature updates resulting from the evolution of avian influenza A(H5) virus clades 2.1.3.2a, 2.2.1, and 2.3.4 during 2013–2014. Influenza Other Respir Viruses 2015; 9:271–276 [View Article][PubMed]
    [Google Scholar]