Ovine PRNP untranslated region and promoter haplotype diversity

References

1. Baybutt H., Manson J. 1997; Characterisation of two promoters for prion protein (PrP) gene expression in neuronal cells. Gene 184:125–131 [CrossRef]
   [Google Scholar]
2. Benestad S. L., Sarradin P., Thu B., Schonheit J., Tranulis M. A., Bratberg B. 2003; Cases of scrapie with unusual features in Norway and designation of a new type, Nor98. Vet Rec 153:202–208 [CrossRef]
   [Google Scholar]
3. Dawson M., Moore R. C., Bishop S. C. 2008; Progress and limits of PrP gene selection policy. Vet Res 39:
   [Google Scholar]
4. Funke-Kaiser H., Theis S., Behrouzi T., Thomas A., Scheuch K., Zollmann F. S., Paterka M., Paul M., Orzechowski H. D. 2001; Functional characterization of the human prion protein promoter in neuronal and endothelial cells. J Mol Med 79:529–535 [CrossRef]
   [Google Scholar]
5. Goldmann W., Hunter N., Smith G., Foster J., Hope J. 1994; PrP genotype and agent effects in scrapie: change in allelic interaction with different isolates of agent in sheep, a natural host of scrapie. J Gen Virol 75:989–995 [CrossRef]
   [Google Scholar]
6. Goldmann W., O'Neill G., Cheung F., Charleson F., Ford P., Hunter N. 1999; PrP (prion) gene expression in sheep may be modulated by alternative polyadenylation of its messenger RNA. J Gen Virol 80:2275–2283
   [Google Scholar]
7. Green B. T., Heaton M. P., Clawson M. L., Laegreid W. W. 2006; Linkage disequilibrium across six prion gene regions spanning 20 kbp in U.S. sheep. Mamm Genome 17:1121–1129 [CrossRef]
   [Google Scholar]
8. Hills D., Comincini S., Schlaepfer J., Dolf G., Ferretti L., Williams J. L. 2001; Complete genomic sequence of the bovine prion gene ( PRNP ) and polymorphism in its promoter region. Anim Genet 32:231–232 [CrossRef]
   [Google Scholar]
9. Inoue S., Tanaka M., Horiuchi M., Ishiguro N., Shinagawa M. 1997; Characterization of the bovine prion protein gene: the expression requires interaction between the promoter and intron. J Vet Med Sci 59:175–183 [CrossRef]
   [Google Scholar]
10. Jang S. K., Pestova T. V., Hellen C. U., Witherell G. W., Wimmer E. 1990; Cap-independent translation of picornavirus RNAs: structure and function of the internal ribosomal entry site. Enzyme 44:292–309
    [Google Scholar]
11. Jean J.-C., Rich C. B., Joyce-Brady M. 2006; Hypoxia results in an HIF-1-dependent induction of brain-specific aldolase C in lung epithelial cells. Am J Physiol Lung Cell Mol Physiol 291:L950–L956 [CrossRef]
    [Google Scholar]
12. Komar A. A., Hatzoglou M. 2005; Internal ribosome entry sites in cellular mRNAs: mystery of their existence. J Biol Chem 280:23425–23428 [CrossRef]
    [Google Scholar]
13. Komar A. A., Lesnik T., Cullin C., Merrick W. C., Trachsel H., Altmann M. 2003; Internal initiation drives the synthesis of Ure2 protein lacking the prion domain and affects [URE3] propagation in yeast cells. EMBO J 22:1199–1209 [CrossRef]
    [Google Scholar]
14. Lai E. C. 2002; Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation. Nat Genet 30:363–364 [CrossRef]
    [Google Scholar]
15. Lee I. Y., Westaway D., Smit A. F., Wang K., Seto J., Chen L., Acharya C., Ankener M., Baskin D. other authors 1998; Complete genomic sequence and analysis of the prion protein gene region from three mammalian species. Genome Res 8:1022–1037
    [Google Scholar]
16. Long J. S., Freese J. 2001 Regression models for categorical dependent variables using STATA College Station, TX: Stata Press;
    [Google Scholar]
17. Matys V., Fricke E., Geffers R., Gössling E., Haubrock M., Hehl R., Hornischer K., Karas D., Kel A. E. other authors 2003; TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res 31:374–378 [CrossRef]
    [Google Scholar]
18. McCormack J. E., Baybutt H. N., Everington D., Will R. G., Ironside J. W., Manson J. C. 2002; PRNP contains both intronic and upstream regulatory regions that may influence susceptibility to Creutzfeldt–Jakob disease. Gene 288:139–146 [CrossRef]
    [Google Scholar]
19. Mignone F., Grillo G., Licciulli F., Iacono M., Liuni S., Kersey P. J., Duarte J., Saccone C., Pesole G. 2005; UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res 33: (Database issue), D141–D146 [CrossRef]
    [Google Scholar]
20. Moum T., Olsaker I., Hopp P., Moldal T., Valheim M., Moum T., Benestad S. L. 2005; Polymorphisms at codons 141 and 154 in the ovine prion protein gene are associated with scrapie Nor98 cases. J Gen Virol 86:231–235 [CrossRef]
    [Google Scholar]
21. O'Neill G. T., Donnelly K., Marshall E., Cairns D., Goldmann W., Hunter N. 2003; Characterization of ovine PrP gene promoter activity in N2a neuroblastoma and ovine foetal brain cell lines. J Anim Breed Genet 120:114–123 [CrossRef]
    [Google Scholar]
22. O'Neill G. T., Cairns D., Toovey L., Goldmann W., Hunter N. 2005; New ovine PrP gene haplotypes as a result of single nucleotide polymorphisms in the PrP gene promoter. J Anim Breed Genet 122:86–94 [CrossRef]
    [Google Scholar]
23. Pesole G., Liuni S. 1999; Internet resources for the functional analysis of 5′ and 3′ untranslated regions of eukaryotic mRNA. Trends Genet 15:378 [CrossRef]
    [Google Scholar]
24. Premzl M., Delbridge M., Gready J. E., Wilson P., Johnson M., Davis J., Kuczek E., Marshall Graves J. A. 2005; The prion protein gene: identifying regulatory signals using marsupial sequence. Gene 349:121–134 [CrossRef]
    [Google Scholar]
25. Prusiner S. B. 1998; Prions. Proc Natl Acad Sci U S A 95:13363–13383 [CrossRef]
    [Google Scholar]
26. Saeki K., Matsumoto Y., Matsumoto Y., Onodera T. 1996; Identification of a promoter region in the rat prion protein gene. Biochem Biophys Res Commun 219:47–52 [CrossRef]
    [Google Scholar]
27. Sander P., Hamann H., Pfeiffer I., Wemheuer W., Brenig B., Groschup M. H., Ziegler U., Distl O., Leeb T. 2004; Analysis of sequence variability of the bovine prion protein gene ( PRNP ) in German cattle breeds. Neurogenetics 5:19–25 [CrossRef]
    [Google Scholar]
28. Sander P., Hamann H., Drogemuller C., Kashkevich K., Schiebel K., Leeb T. 2005; Bovine prion protein gene ( PRNP ) promoter polymorphisms modulate PRNP expression and may be responsible for differences in bovine spongiform encephalopathy susceptibility. J Biol Chem 280:37408–37414 [CrossRef]
    [Google Scholar]
29. Saunders G. C., Cawthraw S., Mountjoy S., Hope J., Windl O. 2006; PrP genotypes of atypical scrapie cases in Great Britain. J Gen Virol 87:3141–3149 [CrossRef]
    [Google Scholar]
30. Zuker M. 2003; Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406–3415 [CrossRef]
    [Google Scholar]