Characterization of novel polyomaviruses from Bornean and Sumatran orang-utans

References

1. Allander T., Andreasson K., Gupta S., Bjerkner A., Bogdanovic G., Persson M. A. A., Dalianis T., Ramqvist T., Andersson B. 2007; Identification of a third human polyomavirus. J Virol 81:4130–4136 [CrossRef]
   [Google Scholar]
2. Axthelm M. K., Koralnik I. J., Dang X., Wuthrich C., Rohne D., Stillman I. E., Letvin N. L. 2004; Meningoencephalitis and demyelination are pathologic manifestations of primary polyomavirus infection in immunosuppressed rhesus monkeys. J Neuropathol Exp Neurol 63:750–758
   [Google Scholar]
3. Chretien F., Boche D., Lorin de la Grandmaison G., Ereau T., Mikol J., Hurtrel M., Hurtrel B., Gray F. 2000; Progressive multifocal leukoencephalopathy and oligodendroglioma in a monkey co-infected by simian immunodeficiency virus and simian virus 40. Acta Neuropathol 100:332–336 [CrossRef]
   [Google Scholar]
4. Feng H., Shuda M., Chang Y., Moore P. S. 2008; Clonal integration of a polyomavirus in human Merkel cell carcinoma. Science 319:1096–1100 [CrossRef]
   [Google Scholar]
5. Gaynor A. M., Nissen M. D., Whiley D. M., Mackay I. M., Lambert S. B., Wu G., Brennan D. C., Storch G. A., Sloots T. P., Wang D. 2007; Identification of a novel polyomavirus from patients with acute respiratory tract infections. PLoS Pathog 3:e64 [CrossRef]
   [Google Scholar]
6. Horvath C. J., Simon M. A., Bergsagel D. J., Pauley D. R., King N. W., Garcea R. L., Ringler D. J. 1992; Simian virus 40-induced disease in rhesus monkeys with simian acquired immunodeficiency syndrome. Am J Pathol 140:1431–1440
   [Google Scholar]
7. Jiang M., Abend J. R., Johnson S. F., Imperiale M. J. 2009; The role of polyomaviruses in human disease. Virology 384:266–273 [CrossRef]
   [Google Scholar]
8. Johne R., Enderlein D., Nieper H., Muller H. 2005; Novel polyomavirus detected in the feces of a chimpanzee by nested broad-spectrum PCR. J Virol 79:3883–3887 [CrossRef]
   [Google Scholar]
9. Khalili K., White M. K., Sawa H., Nagashima K., Safak M. 2005; The agnoprotein of polyomaviruses: a multifunctional auxiliary protein. J Cell Physiol 204:1–7 [CrossRef]
   [Google Scholar]
10. Koliaskina G. I. 1963; Virological and serological data on latent infection caused by Ob40 (Sv40) virus in macaca rhesus monkeys. Vopr Virusol 29:450–452
    [Google Scholar]
11. Li P. P., Nakanishi A., Tran M. A., Salazar A. M., Liddington R. C., Kasamatsu H. 2000; Role of simian virus 40 Vp1 cysteines in virion infectivity. J Virol 74:11388–11393 [CrossRef]
    [Google Scholar]
12. Liddington R. C., Yan Y., Moulai J., Sahli R., Benjamin T. L., Harrison S. C. 1991; Structure of simian virus 40 at 3.8-A resolution. Nature 354:278–284 [CrossRef]
    [Google Scholar]
13. Martini F., Corallini A., Balatti V., Sabbioni S., Pancaldi C., Tognon M. 2007; Simian virus 40 in humans. Infect Agent Cancer 2:13 [CrossRef]
    [Google Scholar]
14. Murata H., Teferedegne B., Sheng L., Lewis A. M. Jr, Peden K. 2008; Identification of a neutralization epitope in the VP1 capsid protein of SV40. Virology 381:116–122 [CrossRef]
    [Google Scholar]
15. Neu U., Woellner K., Gauglitz G., Stehle T. 2008; Structural basis of GM1 ganglioside recognition by simian virus 40. Proc Natl Acad Sci U S A 105:5219–5224 [CrossRef]
    [Google Scholar]
16. Pertea M., Lin X., Salzberg S. L. 2001; GeneSplicer: a new computational method for splice site prediction. Nucleic Acids Res 29:1185–1190 [CrossRef]
    [Google Scholar]
17. Pipas J. M. 1992; Common and unique features of T antigens encoded by the polyomavirus group. J Virol 66:3979–3985
    [Google Scholar]
18. Rogozin I. B., Milanesi L. 1997; Analysis of donor splice sites in different eukaryotic organisms. J Mol Evol 45:50–59 [CrossRef]
    [Google Scholar]
19. Simon M. A., Chalifoux L. V., Ringler D. J. 1992; Pathologic features of SIV-induced disease and the association of macrophage infection with disease evolution. AIDS Res Hum Retroviruses 8:327–337 [CrossRef]
    [Google Scholar]
20. Simon M. A., Ilyinskii P. O., Baskin G. B., Knight H. Y., Pauley D. R., Lackner A. A. 1999; Association of simian virus 40 with a central nervous system lesion distinct from progressive multifocal leukoencephalopathy in macaques with AIDS. Am J Pathol 154:437–446 [CrossRef]
    [Google Scholar]
21. Stehle T., Harrison S. C. 1997; High-resolution structure of a polyomavirus VP1–oligosaccharide complex: implications for assembly and receptor binding. EMBO J 16:5139–5148 [CrossRef]
    [Google Scholar]
22. Stehle T., Gamblin S. J., Yan Y., Harrison S. C. 1996; The structure of simian virus 40 refined at 3.1 A resolution. Structure 4:165–182 [CrossRef]
    [Google Scholar]
23. Sullivan C. S., Cantalupo P., Pipas J. M. 2000; The molecular chaperone activity of simian virus 40 large T antigen is required to disrupt Rb–E2F family complexes by an ATP-dependent mechanism. Mol Cell Biol 20:6233–6243 [CrossRef]
    [Google Scholar]
24. Sweet B. H., Hilleman M. R. 1960; The vacuolating virus, S.V. 40. Proc Soc Exp Biol Med 105:420–427 [CrossRef]
    [Google Scholar]
25. Tamura K., Dudley J., Nei M., Kumar S. 2007; mega4: Molecular Evolutionary Genetics Analysis (mega) software version 4.0. Mol Biol Evol 24:1596–1599 [CrossRef]
    [Google Scholar]
26. Valis J. D., Newell N., Reissig M., Malherbe H., Kaschula V. R., Shah K. V. 1977; Characterization of SA12 as a simian virus 40-related papovavirus of chacma baboons. Infect Immun 18:247–252
    [Google Scholar]
27. Verschoor E. J., Groenewoud M. J., Fagrouch Z., Kewalapat A., van Gessel S., Kik M. J., Heeney J. L. 2008a; Molecular characterization of the first polyomavirus from a New World primate: squirrel monkey polyomavirus. J Gen Virol 89:130–137 [CrossRef]
    [Google Scholar]
28. Verschoor E. J., Niphuis H., Fagrouch Z., Christian P., Sasnauskas K., Pizarro M. C., Heeney J. L. 2008b; Seroprevalence of SV40-like polyomavirus infections in captive and free-ranging macaque species. J Med Primatol 37:196–201 [CrossRef]
    [Google Scholar]
29. Warren K. S., Verschoor E. J., Langenhuijzen S., Heriyanto Swan., A R, Vigilant L., Heeney J. L. 2001; Speciation and intrasubspecific variation of Bornean orangutans, Pongo pygmaeus pygmaeus . Mol Biol Evol 18:472–480 [CrossRef]
    [Google Scholar]
30. zur Hausen H., Gissmann L. 1979; Lymphotropic papovaviruses isolated from African green monkey and human cells. Med Microbiol Immunol 167:137–153 [CrossRef]
    [Google Scholar]