Genomic and antigenic characterization of Jos virus

References

1. Albo C., Valencia A., Portela A. 1995; Identification of an RNA binding region within the N-terminal third of the influenza A virus nucleoprotein. J Virol 69:3799–3806[PubMed]
   [Google Scholar]
2. Beaty B. J., Calisher C. H., Shope R. E. 1989; Arboviruses. In Diagnostic Procedures for Viral, Rickettsial and Chlamydial Infections pp. 797–855 Edited by Schmidt N. J., Emmons R. W. Washington, DC: American Public Health Association;
   [Google Scholar]
3. Bendtsen J. D., Nielsen H., von Heijne G., Brunak S. 2004; Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340:783–795 [View Article][PubMed]
   [Google Scholar]
4. Butenko A. M., Leshchinskaia E. V., Semashko I. V., Donets M. A., Mart’ianova L. I. 1987; [Dhori virus – a causative agent of human disease. 5 cases of laboratory infection]. Vopr Virusol 32:724–729 (in Russian) [PubMed]
   [Google Scholar]
5. Causey O. R., Kemp G. E., Madbouly M. H., Lee V. H. 1969; Arbovirus surveillance in Nigeria, 1964–1967. Bull Soc Pathol Exot 62:249–253[PubMed]
   [Google Scholar]
6. Claros M. G., von Heijne G. 1994; TopPred II: an improved software for membrane protein structure predictions. Comput Appl Biosci 10:685–686[PubMed]
   [Google Scholar]
7. Cox-Foster D. L., Conlan S., Holmes E. C., Palacios G., Evans J. D., Moran N. A., Quan P. L., Briese T., Hornig M. other authors 2007; A metagenomic survey of microbes in honey bee colony collapse disorder. Science 318:283–287 [View Article][PubMed]
   [Google Scholar]
8. Da Silva E. V., Da Rosa A. P., Nunes M. R., Diniz J. A., Tesh R. B., Cruz A. C., Vieira C. M., Vasconcelos P. F. 2005; Araguari virus, a new member of the family Orthomyxoviridae: serologic, ultrastructural, and molecular characterization. Am J Trop Med Hyg 73:1050–1058[PubMed]
   [Google Scholar]
9. Davey J., Dimmock N. J., Colman A. 1985; Identification of the sequence responsible for the nuclear accumulation of the influenza virus nucleoprotein in Xenopus oocytes. Cell 40:667–675 [View Article][PubMed]
   [Google Scholar]
10. Delarue M., Poch O., Tordo N., Moras D., Argos P. 1990; An attempt to unify the structure of polymerases. Protein Eng 3:461–467 [View Article][PubMed]
    [Google Scholar]
11. Fagbami A. H., Ikede B. O. 1978; Pathogenicity and pathology of Jos virus infection in mice and tissue culture. Microbios 21:81–88[PubMed]
    [Google Scholar]
12. Felsenstein J. 1989; phylip – phylogeny inference package (version 3.2). Cladistics 5:164–166
    [Google Scholar]
13. Fuller F. J., Freed Man-Faulstich E. Z., Barnes J. A. 1987; Complete nucleotide sequence of the tick-borne, orthomyxo-like Dhori/Indian/1313/61 virus nucleoprotein gene. Virology 160:81–87 [View Article][PubMed]
    [Google Scholar]
14. Garry C. E., Garry R. F. 2008; Proteomics computational analyses suggest that baculovirus GP64 superfamily proteins are class III penetrenes. Virol J 5:28 [View Article][PubMed]
    [Google Scholar]
15. Hagmaier K., Jennings S., Buse J., Weber F., Kochs G. 2003; Novel gene product of Thogoto virus segment 6 codes for an interferon antagonist. J Virol 77:2747–2752 [View Article][PubMed]
    [Google Scholar]
16. Holmes E. C. 1998; Molecular epidemiology of dengue virus – the time for big science. Trop Med Int Health 3:855–856 [View Article][PubMed]
    [Google Scholar]
17. Hubalek Z., Halouzka J. 1996; Arthropod-borne viruses of vertebrates in Europe. Acta Sc Nat Brno 30:1–95
    [Google Scholar]
18. Institut Pasteur da Dakar 2001 Centre Collaboreur OMS de Reference et de Recherche pour les Arbovirus et Virus de Fievres Hemorragiques, Rapport Annuel 2001 Dakar: Institut Pasteur de Dakar;
    [Google Scholar]
19. Jennings S., Martínez-Sobrido L., García-Sastre A., Weber F., Kochs G. 2005; Thogoto virus ML protein suppresses IRF3 function. Virology 331:63–72 [View Article][PubMed]
    [Google Scholar]
20. Kahsay R. Y., Gao G., Liao L. 2005; An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes. Bioinformatics 21:1853–1858 [View Article][PubMed]
    [Google Scholar]
21. Käll L., Krogh A., Sonnhammer E. L. 2004; A combined transmembrane topology and signal peptide prediction method. J Mol Biol 338:1027–1036 [View Article][PubMed]
    [Google Scholar]
22. Karabatsos N. 1985 International Catalogue of Arbovirus, including Certain Other Viruses of Vertebrates San Antonio, Texas: American Society of Tropical Medicine and Hygiene;
    [Google Scholar]
23. Kawaoka Y. 1991; Equine H7N7 influenza A viruses are highly pathogenic in mice without adaptation: potential use as an animal model. J Virol 65:3891–3894[PubMed]
    [Google Scholar]
24. Kawaoka Y., Cox N. J., Haller O., Hongo S., Kaverin N., Klenk H. D., Lamb R. A., McCauley J., Palese P. other authors 2005; Family Orthomyxoviridae . In Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses pp. 681–693 Edited by Fauquet C. M., Mayo M. A., Maniloff J., Desselberger U., Ball L. A. San Diego: Elsevier Academic Press;
    [Google Scholar]
25. Kelley L. A., Sternberg M. J. 2009; Protein structure prediction on the Web: a case study using the phyre server. Nat Protoc 4:363–371 [View Article][PubMed]
    [Google Scholar]
26. Kobayashi M., Toyoda T., Adyshev D. M., Azuma Y., Ishihama A. 1994; Molecular dissection of influenza virus nucleoprotein: deletion mapping of the RNA binding domain. J Virol 68:8433–8436[PubMed]
    [Google Scholar]
27. Kochs G., Weber F., Gruber S., Delvendahl A., Leitz C., Haller O. 2000; Thogoto virus matrix protein is encoded by a spliced mRNA. J Virol 74:10785–10789[PubMed] [CrossRef]
    [Google Scholar]
28. Krogh A., Larsson B., von Heijne G., Sonnhammer E. L. 2001; Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305:567–580 [View Article][PubMed]
    [Google Scholar]
29. Kumar S., Tamura K., Nei M. 2004; mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150–163 [View Article][PubMed]
    [Google Scholar]
30. Lamb R. A., Krug R. M. 2001; Orthomyoviridae . In Fields Virology, 4th edn. pp. 1487–1532 Edited by Knipe D. M., Howley P. M., Griffin D. E., Lamb R. A., Martin M. A., Roizman B., Straus S. E. Philadelphia: Lippincott Williams & Wilkins;
    [Google Scholar]
31. Lee V. H., Kemp G. E., Madbouly M. H., Moore D. L., Causey O. R., Casals J. 1974; Jos, a new tick-borne virus from Nigeria. Am J Vet Res 35:1165–1167[PubMed]
    [Google Scholar]
32. Lu X., Tumpey T. M., Morken T., Zaki S. R., Cox N. J., Katz J. M. 1999; A mouse model for the evaluation of pathogenesis and immunity to influenza A (H5N1) viruses isolated from humans. J Virol 73:5903–5911[PubMed]
    [Google Scholar]
33. Margulies M., Egholm M., Altman W. E., Attiya S., Bader J. S., Bemben L. A., Berka J., Braverman M. S., Chen Y. J. other authors 2005; Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376–380[PubMed]
    [Google Scholar]
34. Martin D., Rybicki E. 2000; RDP: detection of recombination amongst aligned sequences. Bioinformatics 16:562–563 [View Article][PubMed]
    [Google Scholar]
35. Mateo R. I., Xiao S. Y., Lei H., Da Rosa A. P., Tesh R. B. 2007; Dhori virus (Orthomyxoviridae: Thogotovirus) infection in mice: a model of the pathogenesis of severe orthomyxovirus infection. Am J Trop Med Hyg 76:785–790[PubMed]
    [Google Scholar]
36. Moore D. L., Causey O. R., Carey D. E., Reddy S., Cooke A. R., Akinkugbe F. M., David-West T. S., Kemp G. E. 1975; Arthropod-borne viral infections of man in Nigeria, 1964–1970. Ann Trop Med Parasitol 69:49–64[PubMed]
    [Google Scholar]
37. Müller R., Poch O., Delarue M., Bishop D. H., Bouloy M. 1994; Rift Valley fever virus L segment: correction of the sequence and possible functional role of newly identified regions conserved in RNA-dependent polymerases. J Gen Virol 75:1345–1352 [View Article][PubMed]
    [Google Scholar]
38. Nair R., Rost B. 2005; Mimicking cellular sorting improves prediction of subcellular localization. J Mol Biol 348:85–100 [View Article][PubMed]
    [Google Scholar]
39. Palacios G., Druce J., Du L., Tran T., Birch C., Briese T., Conlan S., Quan P. L., Hui J. other authors 2008; A new arenavirus in a cluster of fatal transplant-associated diseases. N Engl J Med 358:991–998 [View Article][PubMed]
    [Google Scholar]
40. Perales B., de la Luna S., Palacios I., Ortín J. 1996; Mutational analysis identifies functional domains in the influenza A virus PB2 polymerase subunit. J Virol 70:1678–1686[PubMed]
    [Google Scholar]
41. Poch O., Sauvaget I., Delarue M., Tordo N. 1989; Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. EMBO J 8:3867–3874[PubMed]
    [Google Scholar]
42. Popov V. L., Chen S. M., Feng H. M., Walker D. H. 1995; Ultrastructural variation of cultured Ehrlichia chaffeensis . J Med Microbiol 43:411–421 [View Article][PubMed]
    [Google Scholar]
43. Posada D., Crandall K. A. 2001; Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc Natl Acad Sci U S A 98:13757–13762 [View Article][PubMed]
    [Google Scholar]
44. Presti R. M., Zhao G., Beatty W. L., Mihindukulasuriya K. A., Travassos da Rosa A. P., Popov V. L., Tesh R. B., Virgin H. W., Wang D. 2009; Quaranfil, Johnston Atoll, and Lake Chad viruses are novel members of the family Orthomyxoviridae . J Virol 83:11599–11606 [View Article][PubMed]
    [Google Scholar]
45. Salminen M. O., Carr J. K., Burke D. S., McCutchan F. E. 1995; Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. AIDS Res Hum Retroviruses 11:1423–1425 [View Article][PubMed]
    [Google Scholar]
46. Smith J. M. 1992; Analyzing the mosaic structure of genes. J Mol Evol 34:126–129 [View Article][PubMed]
    [Google Scholar]
47. Sureau P., Cornet J. P., Germain M., Camicas J. L., Robin Y. 1976; [Survey of tick-borne arboviruses in the Central African Republic (1973–1974). Isolation of Dugbe, CHF/Congo, Jos and Bhanja viruses]. Bull Soc Pathol Exot 69:28–33 in French
    [Google Scholar]
48. Travassos da Rosa A. P., Tesh R. B., Pinheiro F. P., Travassos da Rosa J. F., Peterson N. E. 1983; Characterization of eight new phlebotomus fever serogroup arboviruses (Bunyaviridae: Phlebovirus) from the Amazon region of Brazil. Am J Trop Med Hyg 32:1164–1171[PubMed]
    [Google Scholar]
49. Vieth S., Torda A. E., Asper M., Schmitz H., Günther S. 2004; Sequence analysis of L RNA of Lassa virus. Virology 318:153–168 [View Article][PubMed]
    [Google Scholar]
50. Weber F., Haller O., Kochs G. 1996; Nucleoprotein viral RNA and mRNA of Thogoto virus: a novel ‘cap-stealing’ mechanism in tick-borne orthomyxoviruses?. J Virol 70:8361–8367[PubMed]
    [Google Scholar]
51. Weber F., Haller O., Kochs G. 1997; Conserved vRNA end sequences of Thogoto-orthomyxovirus suggest a new panhandle structure. Arch Virol 142:1029–1033 [View Article][PubMed]
    [Google Scholar]
52. Weber F., Kochs G., Gruber S., Haller O. 1998; A classical bipartite nuclear localization signal on Thogoto and influenza A virus nucleoproteins. Virology 250:9–18 [View Article][PubMed]
    [Google Scholar]
53. Wimley W. C., White S. H. 1996; Experimentally determined hydrophobicity scale for proteins at membrane interfaces. Nat Struct Biol 3:842–848 [View Article][PubMed]
    [Google Scholar]
54. Wood O. L., Lee V. H., Ash J. S., Casals J. 1978; Crimean-Congo hemorrhagic fever, Thogoto, dugbe, and Jos viruses isolated from ixodid ticks in Ethiopia. Am J Trop Med Hyg 27:600–604[PubMed]
    [Google Scholar]
55. Xu F., Liu D., Nunes M. R., Travassos da Rosa A. P., Tesh R. B., Xiao S. Y. 2007; Antigenic and genetic relationships among Rift Valley fever virus and other selected members of the genus Phlebovirus (Bunyaviridae). Am J Trop Med Hyg 76:1194–1200[PubMed]
    [Google Scholar]