Virus isolate from carp: genetic characterization reveals a novel picornavirus with two aphthovirus 2A-like sequences

References

1. Adams M. J., King A. M. Q., Carstens E. B. 2013; Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2013). Arch Virol 158:2023–2030 [View Article][PubMed]
   [Google Scholar]
2. Boros A., Pankovics P., Simmonds P., Reuter G. 2011; Novel positive-sense, single-stranded RNA (+ssRNA) virus with di-cistronic genome from intestinal content of freshwater carp (Cyprinus carpio). PLoS ONE 6:e29145 [View Article][PubMed]
   [Google Scholar]
3. Dauber M., Schütze H., Fichtner D. 2001; Development and characterisation of monoclonal antibodies raised against a viral haemorrhagic septicaemia virus (VHSV) isolate which failed to be identified by a commercial test kit. Bull Eur Assoc Fish Pathol 21:170–177
   [Google Scholar]
4. Fichtner D., Philipps A., Groth M., Schmidt-Posthaus H., Granzow H., Dauber M., Platzer M., Bergmann S. M., Schrudde D.other authors 2013; Characterization of a novel picornavirus isolate from a diseased European eel (Anguilla anguilla). J Virol 87:10895–10899 [View Article][PubMed]
   [Google Scholar]
5. Fijan N., Petrinec Z., Sulimanovic D., Zwillenberg L. O. 1971; Isolation of the viral causative agent from the acute form of infectious dropsy of carp. Vet Arh 41:125–138
   [Google Scholar]
6. Graff J., Richards O. C., Swiderek K. M., Davis M. T., Rusnak F., Harmon S. A., Jia X. Y., Summers D. F., Ehrenfeld E. 1999; Hepatitis A virus capsid protein VP1 has a heterogeneous C terminus. J Virol 73:6015–6023[PubMed]
   [Google Scholar]
7. Kapoor A., Simmonds P., Lipkin W. I., Zaidi S., Delwart E. 2010; Use of nucleotide composition analysis to infer hosts for three novel picorna-like viruses. J Virol 84:10322–10328 [View Article][PubMed]
   [Google Scholar]
8. Knowles N. J., Hovi T., Hyypiä T., King A. M. Q., Lindberg A. M., Pallansch M. A., Palmenberg A. C., Simmonds P., Skern T.other authors 2012; Picornaviridae . In Virus Taxonomy, Ninth Report of the International Committee on Taxonomy of Viruses pp. 855–880 Edited by King A. M. Q., Adams M. J., Carstens E. B., Lefkowitz E. J. Amsterdam: Elsevier;
   [Google Scholar]
9. Koonin E. V., Dolja V. V. 1993; Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 28:375–430 [View Article][PubMed]
   [Google Scholar]
10. Kozak M. 1987; An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs. Nucleic Acids Res 15:8125–8148 [View Article][PubMed]
    [Google Scholar]
11. Langdon J. S., Humphrey J. D., Williams L. M. 1988; Outbreaks of an EHNV-like iridovirus in cultured rainbow trout, Salmo gairdneri Richardson, in Australia. J Fish Dis 11:93–96 [View Article]
    [Google Scholar]
12. Luke G. A., de Felipe P., Lukashev A., Kallioinen S. E., Bruno E. A., Ryan M. D. 2008; Occurrence, function and evolutionary origins of ‘2A-like’ sequences in virus genomes. J Gen Virol 89:1036–1042 [View Article][PubMed]
    [Google Scholar]
13. Ng T. F. F., Marine R., Wang C., Simmonds P., Kapusinszky B., Bodhidatta L., Oderinde B. S., Wommack K. E., Delwart E. 2012; High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage. J Virol 86:12161–12175 [View Article][PubMed]
    [Google Scholar]
14. Philipps A., Dauber M., Groth M., Schirrmeier H., Platzer M., Krumbholz A., Wutzler P., Zell R. 2012; Isolation and molecular characterization of a second serotype of the encephalomyocarditis virus. Vet Microbiol 161:49–57 [View Article][PubMed]
    [Google Scholar]
15. Ronquist F., Huelsenbeck J. P. 2003; MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574 [View Article][PubMed]
    [Google Scholar]
16. Shan T., Li L., Simmonds P., Wang C., Moeser A., Delwart E. 2011; The fecal virome of pigs on a high-density farm. J Virol 85:11697–11708 [View Article][PubMed]
    [Google Scholar]
17. Simmonds P. 2012; SSE: a nucleotide and amino acid sequence analysis platform. BMC Res Notes 5:50 [View Article][PubMed]
    [Google Scholar]
18. Stanway G., Brown F., Christian P., Hovi T., Hyypiä T., King A. M. Q., Knowles N. J., Lemon S. M., Minor P. D.other authors 2005; Picornaviridae. In Virus Taxonomy. Eighth Report of the International Committee on Taxonomy of Viruses pp. 757–778 Edited by Fauquet C. M., Mayo M. A., Maniloff J., Desselberger U., Ball L. A. Amsterdam: Elsevier;
    [Google Scholar]
19. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. 2011; MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739 [View Article][PubMed]
    [Google Scholar]
20. Vestergård Jorgensen P., Grauballe P. C. 1971; Problems in the serological typing of IPN virus. Acta Vet Scand 12:145–147[PubMed]
    [Google Scholar]
21. Woo P. C. Y., Lau S. K. P., Choi G. K. Y., Huang Y., Teng J. L. L., Tsoi H. W., Tse H., Yeung M. L., Chan K. H.other authors 2012; Natural occurrence and characterization of two internal ribosome entry site elements in a novel virus, canine picodicistrovirus, in the picornavirus-like superfamily. J Virol 86:2797–2808 [View Article][PubMed]
    [Google Scholar]