RT Journal Article SR Electronic(1) A1 Fang, Zhong-Liao A1 Sabin, Caroline A. A1 Dong, Bai-Qing A1 Wei, Shao-Chao A1 Chen, Qin-Yan A1 Fang, Kong-Xiong A1 Yang, Jin-Ye A1 Huang, Jian A1 Wang, Xue-Yan A1 Harrison, Tim J.YR 2008 T1 Hepatitis B virus pre-S deletion mutations are a risk factor for hepatocellular carcinoma: a matched nested case–control study JF Journal of General Virology, VO 89 IS 11 SP 2882 OP 2890 DO https://doi.org/10.1099/vir.0.2008/002824-0 PB Microbiology Society, SN 1465-2099, AB A matched nested case–control study of 33 paired cases and controls was conducted, based on a study cohort in Long An county, Guangxi, China, to determine whether infection with hepatitis B virus (HBV) with pre-S deletions is independently associated with the development of hepatocellular carcinoma (HCC), without the confounding effects of basal core promoter (BCP) double mutations. The prevalence of pre-S deletions was significantly higher in HCC (45.5 %, 15 of 33) than the controls (18.2 %, 6 of 33) (P<0.01), under the control of the influence of BCP double mutations. Most of the pre-S deletions occurred in, or involved, the 5′ half of the pre-S2 region and the difference between HCC (93.3 %, 14 of 15) and controls (66.7 %, four of six) was significant for this region (P=0.015). There was no significant difference in pre-S deletions between the BCP mutant group and BCP wild-type group (P>0.05), nor was the prevalence of pre-S deletions significantly different between genotypes B and C (P>0.1). These results suggest that pre-S deletions constitute an independent risk factor for HCC and their emergence and effect are independent of BCP mutations. The 5′ terminus of pre-S2 is the favoured site for the deletion mutations, especially in HCC cases. Further prospective studies are required to confirm the role of these mutations in the development of HCC., UL https://www.microbiologyresearch.org/content/journal/jgv/10.1099/vir.0.2008/002824-0