1887

Abstract

The interactions between different genotypes of (HBV) in co-infected patients remain largely unknown, especially in acute infection. Here, the evolution of HBV strains was studied in an acute, self-limited hepatitis B patient co-infected with genotypes Ba (B2) and C. Virological analyses were performed at four time points after admission: T1 (5 days), T2 (11 days), T3 (22 days) and T4 (260 days). A dominant-genotype change from genotype C to Ba was found after anti-HBV e antigen (anti-HBe) seroconversion. Further clonal and phylogenetic analyses of the pre-S and pre-core/core regions of HBV were carried out to clarify the interactions between genotypes Ba and C. All clones propagated from T1 and T2 were of genotype C. In contrast, clones propagated from T3 (after anti-HBe seroconversion) were of genotype Ba, C and/or recombinant within the pre-S region. At T4, all clones were of genotype Ba with a 123 bp (from nt 3147 of the pre-S1 region to nt 54 of the pre-S2 region) in-frame pre-S deletion and had lost the start codon of the middle envelope protein and the nucleocapsid-binding site. Phylogenetic analysis showed that genetic distance was greater at T3 after seroconversion to anti-HBe. By using SimPlot, the breakpoint of one pre-S recombinant was located at nt 3069–3100 and the other two at nt 49–87. In conclusion, HBV genotype Ba may overtake genotype C as the predominant strain after anti-HBe seroconversion in acute hepatitis B. Recombination within the pre-S region emerged transiently and the pre-S deletion mutant was finally cleared.

Loading

Article metrics loading...

/content/journal/jgv/10.1099/vir.0.81357-0
2006-01-01
2024-04-19
Loading full text...

Full text loading...

/deliver/fulltext/jgv/87/1/39.html?itemId=/content/journal/jgv/10.1099/vir.0.81357-0&mimeType=html&fmt=ahah

References

  1. Akuta N., Suzuki F., Kobayashi M. & 9 other authors 2003; The influence of hepatitis B virus genotype on the development of lamivudine resistance during long-term treatment. J Hepatol 38:315–321
    [Google Scholar]
  2. Arauz-Ruiz P., Norder H., Robertson B. H., Magnius L. O. 2002; Genotype H: a new Amerindian genotype of hepatitis B virus revealed in Central America. J Gen Virol 83:2059–2073
    [Google Scholar]
  3. Bahn A., Gerner P., Martiné U., Bortolotti F., Wirth S. 1997; Detection of different viral strains of hepatitis B virus in chronically infected children after seroconversion from HBsAg to anti-HBs indicating viral persistence. J Hepatol 27:973–978 [CrossRef]
    [Google Scholar]
  4. Barnes W. M. 1992; The fidelity of Taq polymerase catalyzing PCR is improved by an N-terminal deletion. Gene 112:29–35 [CrossRef]
    [Google Scholar]
  5. Bock C.-T., Kubicka S., Manns M. P., Trautwein C. 1999; Two control elements in the hepatitis B virus S-promoter are important for full promoter activity mediated by CCAAT-binding factor. Hepatology 29:1236–1247 [CrossRef]
    [Google Scholar]
  6. Bollyky P. L., Rambaut A., Harvey P. H., Holmes E. C. 1996; Recombination between sequences of hepatitis B virus from different genotypes. J Mol Evol 42:97–102 [CrossRef]
    [Google Scholar]
  7. Bowyer S. M., Sim J. G. M. 2000; Relationships within and between genotypes of hepatitis B virus at points across the genome: footprints of recombination in certain isolates. J Gen Virol 81:379–392
    [Google Scholar]
  8. Buckwold V. E., Xu Z., Chen M., Yen T. S. B., Ou J.-H. 1996; Effects of a naturally occurring mutation in the hepatitis B virus basal core promoter on precore gene expression and viral replication. J Virol 70:5845–5851
    [Google Scholar]
  9. Carman W. F., Jacyna M. R., Hadziyannis S., Karayiannis P., McGarvey M. J., Makris A., Thomas H. C. 1989; Mutation preventing formation of hepatitis B e antigen in patients with chronic hepatitis B infection. Lancet ii588–591
    [Google Scholar]
  10. Chan H. L. Y., Hussain M., Lok A. S. F. 1999; Different hepatitis B virus genotypes are associated with different mutations in the core promoter and precore regions during hepatitis B e antigen seroconversion. Hepatology 29:976–984 [CrossRef]
    [Google Scholar]
  11. Chan H. L. Y., Tsui S. K. W., Tse C.-H. & 8 other authors 2005; Epidemiological and virological characteristics of 2 subgroups of hepatitis B virus genotype C. J Infect Dis 191:2022–2032 [CrossRef]
    [Google Scholar]
  12. Chen B.-F., Kao J.-H., Liu C.-J., Chen D.-S., Chen P.-J. 2004a; Genotypic dominance and novel recombinations in HBV genotype B and C co-infected intravenous drug users. J Med Virol 73:13–22 [CrossRef]
    [Google Scholar]
  13. Chen B.-F., Chen P.-J., Jow G.-M., Sablon E., Liu C.-J., Chen D.-S., Kao J.-H. 2004b; High prevalence of mixed genotype infections in hepatitis B virus infected intravenous drug users. J Med Virol 74:536–542 [CrossRef]
    [Google Scholar]
  14. Georgi-Geisberger P., Berns H., Loncarevic I. F., Yu Z. Y., Tang Z. Y., Zentgraf H., Schroder C. H. 1992; Mutations on free and integrated hepatitis B virus DNA in a hepatocellular carcinoma: footprints of homologous recombination. Oncology 49:386–395 [CrossRef]
    [Google Scholar]
  15. Gerner P. R., Friedt M., Oettinger R., Lausch E., Wirth S. 1998; The hepatitis B virus seroconversion to anti-HBe is frequently associated with HBV genotype changes and selection of preS2-defective particles in chronically infected children. Virology 245:163–172 [CrossRef]
    [Google Scholar]
  16. Hannoun C., Norder H., Lindh M. 2000; An aberrant genotype revealed in recombinant hepatitis B virus strains from Vietnam. J Gen Virol 81:2267–2272
    [Google Scholar]
  17. Hou J., Schilling R., Janssen H. L. A., Heijtink R. A., Williams R., Schalm S. W., Naoumov N. V. 2001; Molecular characteristics of hepatitis B virus genotype A confer a higher response rate to interferon treatment. J Hepatol 34 (Suppl. 1):15–16 [CrossRef]
    [Google Scholar]
  18. Huy T. T.-T., Ushijima H., Quang V. X., Win K. M., Luengrojanakul P., Kikuchi K., Sata T., Abe K. 2004; Genotype C of hepatitis B virus can be classified into at least two subgroups. J Gen Virol 85:283–292 [CrossRef]
    [Google Scholar]
  19. Imamura T., Yokosuka O., Kurihara T., Kanda T., Fukai K., Imazeki F., Saisho H. 2003; Distribution of hepatitis B viral genotypes and mutations in the core promoter and precore regions in acute forms of liver disease in patients from Chiba, Japan. Gut 52:1630–1637 [CrossRef]
    [Google Scholar]
  20. Kao J.-H., Chen D.-S. 2002; Global control of hepatitis B virus infection. Lancet Infect Dis 2:395–403 [CrossRef]
    [Google Scholar]
  21. Kao J.-H., Chen P.-J., Lai M.-Y., Chen D.-S. 2000a; Hepatitis B genotypes correlate with clinical outcomes in patients with chronic hepatitis B. Gastroenterology 118:554–559 [CrossRef]
    [Google Scholar]
  22. Kao J.-H., Wu N.-H., Chen P.-J., Lai M.-Y., Chen D.-S. 2000b; Hepatitis B genotypes and the response to interferon therapy. J Hepatol 33:998–1002 [CrossRef]
    [Google Scholar]
  23. Kao J.-H., Chen P.-J., Lai M.-Y., Chen D.-S. 2001; Acute exacerbations of chronic hepatitis B are rarely associated with superinfection of hepatitis B virus. Hepatology 34:817–823 [CrossRef]
    [Google Scholar]
  24. Kao J.-H., Chen P.-J., Lai M.-Y., Chen D.-S. 2002; Clinical and virological aspects of blood donors infected with hepatitis B virus genotypes B and C. J Clin Microbiol 40:22–25 [CrossRef]
    [Google Scholar]
  25. Kao J.-H., Chen P.-J., Lai M.-Y., Chen D.-S. 2003; Basal core promoter mutations of hepatitis B virus increase the risk of hepatocellular carcinoma in hepatitis B carriers. Gastroenterology 124:327–334 [CrossRef]
    [Google Scholar]
  26. Kato H., Orito E., Gish R. G. & 7 other authors 2002; Hepatitis B e antigen in sera from individuals infected with hepatitis B virus of genotype G. Hepatology 35:922–929 [CrossRef]
    [Google Scholar]
  27. Kimbi G. C., Kramvis A., Kew M. C. 2004; Distinctive sequence characteristics of subgenotype A1 isolates of hepatitis B virus from South Africa. J Gen Virol 85:1211–1220 [CrossRef]
    [Google Scholar]
  28. Kobayashi M., Arase Y., Ikeda K. & 12 other authors 2004; Wild-type precore and core promoter sequences in patients with acute self-limited or chronic hepatitis B. Scand J Gastroenterol 39:53–59 [CrossRef]
    [Google Scholar]
  29. Kumar S., Tamura K., Nei M. 2004; mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150–163 [CrossRef]
    [Google Scholar]
  30. Kwok S., Higuchi R. 1989; Avoiding false positives with PCR. Nature 339:237–238 [CrossRef]
    [Google Scholar]
  31. Le Seyec J., Chouteau P., Cannie I., Guguen-Guillouzo C., Gripon P. 1998; Role of the pre-S2 domain of the large envelope protein in hepatitis B virus assembly in infectivity. J Virol 72:5573–5578
    [Google Scholar]
  32. Li J.-S., Tong S.-P., Wen Y.-M., Vitvitski L., Zhang Q., Trepo C. 1993; Hepatitis B virus genotype A rarely circulates as an HBe-minus mutant: possible contribution of a single nucleotide in the precore region. J Virol 67:5402–5410
    [Google Scholar]
  33. Lole K. S., Bollinger R. C., Paranjape R. S., Gadkari D., Kulkarni S. S., Novak N. G., Ingersoll R., Sheppard H. W., Ray S. C. 1999; Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73:152–160
    [Google Scholar]
  34. Milich D. R., Jones J. E., McLachlan A., Bitter G., Moriarty A., Hughes J. L. 1990; Importance of subtype in the immune response to the pre-S2 region of the hepatitis B surface antigen. II. Synthetic Pre-S2 immunogen. J Immunol 144:3544–3551
    [Google Scholar]
  35. Morozov V., Pisareva M., Groudinin M. 2000; Homologous recombination between different genotypes of hepatitis B virus. Gene 260:55–65 [CrossRef]
    [Google Scholar]
  36. Norder H., Couroucé A.-M., Magnius L. O. 1994; Complete genomes, phylogenetic relatedness, and structural proteins of six strains of the hepatitis B virus, four of which represent two new genotypes. Virology 198:489–503 [CrossRef]
    [Google Scholar]
  37. Norder H., Couroucé A.-M., Coursaget P., Echevarria J. M., Lee S.-D., Mushahwar I. K., Robertson B. H., Locarnini S., Magnius L. O. 2004; Genetic diversity of hepatitis B virus strains derived worldwide: genotypes, subgenotypes, and HBsAg subtypes. Intervirology 47:289–309 [CrossRef]
    [Google Scholar]
  38. Orito E., Mizokami M., Sakugawa H., Michitaka K., Ishikawa K., Ichida T., Okanoue T., Yotsuyanagi H., Iino S. 2001; A case-control study for clinical and molecular biological differences between hepatitis B viruses of genotypes B and C. Hepatology 33:218–223 [CrossRef]
    [Google Scholar]
  39. Owiredu W. K. B. A., Kramvis A., Kew M. C. 2001; Hepatitis B virus DNA in serum of healthy black African adults positive for hepatitis B surface antibody alone: possible association with recombination between genotypes A and D. J Med Virol 64:441–454 [CrossRef]
    [Google Scholar]
  40. Poisson F., Severac A., Hourioux C., Goudeau A., Roingeard P. 1997; Both pre-S1 and S domains of hepatitis B virus envelope proteins interact with the core particle. Virology 228:115–120 [CrossRef]
    [Google Scholar]
  41. Pollicino T., Zanetti A. R., Cacciola I. & 8 other authors 1997; Pre-S defective hepatitis B virus infection in patients with fulminant hepatitis. Hepatology 26:495–499 [CrossRef]
    [Google Scholar]
  42. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
  43. Sánchez-Tapias J. M., Costa J., Mas A., Bruguera M., Rodés J. 2002; Influence of hepatitis B virus genotype on the long-term outcome of chronic hepatitis B in western patients. Gastroenterology 123:1848–1856 [CrossRef]
    [Google Scholar]
  44. Seeger C., Mason W. S. 2000; Hepatitis B virus biology. Microbiol Mol Biol Rev 64:51–68 [CrossRef]
    [Google Scholar]
  45. Sobotta D., Sominskaya I., Jansons J., Meisel H., Schmitt S., Heermann K.-H., Kaluza G., Pumpens P., Gerlich W. H. 2000; Mapping of immunodominant B-cell epitopes and the human serum albumin-binding site in natural hepatitis B virus surface antigen of defined genosubtype. J Gen Virol 81:369–378
    [Google Scholar]
  46. Stuyver L., De Gendt S., Van Geyt C., Zoulim F., Fried M., Schinazi R. F., Rossau R. 2000; A new genotype of hepatitis B virus: complete genome and phylogenetic relatedness. J Gen Virol 81:67–74
    [Google Scholar]
  47. Sugauchi F., Orito E., Ichida T. & 9 other authors 2002; Hepatitis B virus of genotype B with or without recombination with genotype C over the precore region plus the core gene. J Virol 76:5985–5992 [CrossRef]
    [Google Scholar]
  48. Sugauchi F., Orito E., Ichida T. & 10 other authors 2003; Epidemiologic and virologic characteristics of hepatitis B virus genotype B having the recombination with genotype C. Gastroenterology 124:925–932 [CrossRef]
    [Google Scholar]
  49. Thakur V., Guptan R. C., Kazim S. N., Malhotra V., Sarin S. K. 2002; Profile, spectrum and significance of HBV genotypes in chronic liver disease patients in the Indian subcontinent. J Gastroenterol Hepatol 17:165–170 [CrossRef]
    [Google Scholar]
  50. Thompson J. D., Higgins D. G., Gibson T. J. 1994; clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680 [CrossRef]
    [Google Scholar]
  51. Whalley S. A., Brown D., Webster G. J. M., Jacobs R., Reignat S., Bertoletti A., Teo C.-G., Emery V., Dusheiko G. M. 2004; Evolution of hepatitis B virus during primary infection in humans: transient generation of cytotoxic T-cell mutants. Gastroenterology 127:1131–1138 [CrossRef]
    [Google Scholar]
  52. Yeh S.-H., Tsai C.-Y., Kao J.-H. & 8 other authors 2004; Quantification and genotyping of hepatitis B virus in a single reaction by real-time PCR and melting curve analysis. J Hepatol 41:659–666 [CrossRef]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/jgv/10.1099/vir.0.81357-0
Loading
/content/journal/jgv/10.1099/vir.0.81357-0
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error