Intrahost evolution of HBe antigen-negative hepatitis B virus genomes ascribed to the F genotype: a longitudinal 3 year retrospective study

References

1. Chang S. F., Chang S. H., Li B. C., Will H., Netter H. J. 2004; Characterization of non-conventional hepatitis B viruses lacking the core promoter. Virology 330:437–446 [CrossRef]
   [Google Scholar]
2. Esteban J. I., Martell M., Carman W. F., Gomez J. 1999; The impact of rapid evolution of the hepatitis viruses. In Origin and Evolution of Viruses pp  345–376 Edited by Domingo E., Webster R., Holland J. San Diego: Academic Press;
   [Google Scholar]
3. Favre D., Petit M.-A., Trépo C. 2003; Latent hepatitis B virus (HBV) infection and HBV DNA integration is associated with further transformation of hepatoma cells in vitro. ALTEX 3:131–142
   [Google Scholar]
4. Gunther S., Li B. C., Miska S., Kruger D. H., Meisel H., Will H. 1995; A novel method for efficient amplification of whole hepatitis B virus genomes permits rapid functional analysis and reveals deletion mutants in immunosuppressed patients. J Virol 69:5437–5444
   [Google Scholar]
5. Kumar S., Tamura K., Jakobsen I. B., Nei M. 2001; mega2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244–1245 [CrossRef]
   [Google Scholar]
6. Mbayed V. A., Barbini L., Lopez J. L., Campos R. H. 2001; Phylogenetic analysis of the hepatitis B virus (HBV) genotype F including Argentine isolates. Arch Virol 146:1803–1810 [CrossRef]
   [Google Scholar]
7. Piñeiro Mbayed V. A., Campos R. H., Leone F. G. 2003; Evolutionary history of hepatitis B virus genotype F: an in-depth analysis of Argentine isolates. Virus Genes 27:103–110 [CrossRef]
   [Google Scholar]
8. Posada D., Crandall K. A. 1998; modeltest: testing the model of DNA substitution. Bioinformatics 14:817–818 [CrossRef]
   [Google Scholar]
9. Preikschat P., Gunther S., Reinhold S., Will H., Budde K., Neumayer H. H., Kruger D. H., Meisel H. 2002; Complex HBV populations with mutations in core promoter, C gene, and Pre-S region are associated with development of cirrhosis in long-term renal transplant recipients. Hepatology 35:466–477 [CrossRef]
   [Google Scholar]
10. Ray S. C., Fanning L., Wang X.-H., Netski D. M., Kenny-Walsh E., Thomas D. L. 2005; Divergent and convergent evolution after a common-source outbreak of hepatitis C virus. J Exp Med 201:1753–1759 [CrossRef]
    [Google Scholar]
11. Sommer G., Gunther S., Sterneck M., Otto S., Will H. 1997; A new class of defective hepatitis B virus genomes with an internal poly(dA) sequence. Virology 239:402–412 [CrossRef]
    [Google Scholar]
12. Staprans S., Loeb D. D., Ganem D. 1991; Mutations affecting hepadnavirus plus-strand DNA synthesis dissociate primer cleavage from translocation and reveal the origin of linear viral DNA. J Virol 65:1255–1262
    [Google Scholar]
13. Swofford D. L., Waddell P. J., Huelsenbeck J. P., Foster P. G., Lewis P. O., Rogers J. S. 2001; Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods. Syst Biol 50:525–539 [CrossRef]
    [Google Scholar]
14. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876–4882
    [Google Scholar]
15. Tu T., Bonura C., Giannini C., Mouly H., Soussan P., Kew M., Paterlini-Brechot P., Brechot C., Kremsdorf D. 2001; Biological impact of natural COOH-terminal deletions of hepatitis B virus X protein in hepatocellular carcinoma tissues. Cancer Res 61:7803–7810
    [Google Scholar]
16. Wang Y., Lau S. H., Sham J. S.-T., Wu M.-C., Wang T., Guan X.-Y. 2004; Characterization of HBV integrants in 14 hepatocellular carcinomas: association of truncated X gene and hepatocellular carcinogenesis. Oncogene 23:142–148 [CrossRef]
    [Google Scholar]
17. Yang W., Summers J. 1998; Infection of ducklings with virus particles containing linear double-stranded duck hepatitis B virus DNA: illegitimate replication and reversion. J Virol 72:8710–8717
    [Google Scholar]