Evolutionary relationships among Astroviridae

References

1. Belliot G., Laveran H., Monroe S. S. 1997; Detection and genetic differentiation of human astroviruses: phylogenetic grouping varies by coding region. Archives of Virology 142:1323–1334
   [Google Scholar]
2. Cornelissen M., van den Burg R., Zorgdrager F., Lukashov V., Goudsmit J. 1997; pol gene diversity of five human immunodeficiency virus type 1 subtypes: evidence for naturally occurring mutations that contribute to drug resistance, limited recombination patterns, and common ancestry for subtypes B and D. Journal of Virology 71:6348–6358
   [Google Scholar]
3. Goudsmit J., Lukashov V. V. 1999; Dating the origin of HIV-1 subtypes. Nature 400:325–326
   [Google Scholar]
4. Hall T. A. 1999; BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41:95–98
   [Google Scholar]
5. Imada T., Yamaguchi S., Mase M., Tsukamoto K., Kubo M., Morooka A. 2000; Avian nephritis virus (ANV) as a new member of the family Astroviridae and construction of infectious ANV cDNA. Journal of Virology 74:8487–8493
   [Google Scholar]
6. Jiang B., Monroe S. S., Koonin E. V., Stine S. E., Glass R. I. 1993; RNA sequence of astrovirus: distinctive genomic organization and a putative retrovirus-like ribosomal frameshifting signal that directs the viral replicase synthesis. Proceedings of the National Academy of Sciences, USA 90:10539–10543
   [Google Scholar]
7. Jonassen C. M., Jonassen T. O., Grinde B. 1998; A common RNA motif in the 3’ end of the genomes of astroviruses, avian infectious bronchitis virus and an equine rhinovirus. Journal of General Virology 79:715–718
   [Google Scholar]
8. Jonassen C. M., Jonassen T. O., Saif Y. M., Snodgrass D. R., Ushijima H., Shimizu M., Grinde B. 2001; Comparison of capsid sequences from human and animal astroviruses. Journal of General Virology 82:1061–1067
   [Google Scholar]
9. Koci M. D., Seal B. S., Schultz-Cherry S. 2000; Molecular characterization of an avian astrovirus. Journal of Virology 74:6173–6177
   [Google Scholar]
10. Kumar S., Hedges S. B. 1998; A molecular timescale for vertebrate evolution. Nature 392:917–920
    [Google Scholar]
11. Kumar S., Tamura K., Nei M. 1993 Molecular evolutionary genetics analysis (MEGA). Institute of Molecular Evolutionary Genetics Pennsylvania State University, University Park; Pennsylvania, USA:
    [Google Scholar]
12. Lewis T. L., Greenberg H. B., Herrmann J. E., Smith L. S., Matsui S. M. 1994; Analysis of astrovirus serotype 1 RNA, identification of the viral RNA-dependent RNA polymerase motif, and expression of a viral structural protein. Journal of Virology 68:77–83
    [Google Scholar]
13. Lukashov V. V., Goudsmit J. 1997; Evolution of the human immunodeficiency virus type 1 subtype-specific V3 domain is confined to a sequence space with a fixed distance to the subtype consensus. Journal of Virology 71:6332–6338
    [Google Scholar]
14. Lukashov V. V., Goudsmit J. 2001; Evolutionary relationships among parvoviruses: virus–host coevolution among autonomous primate parvoviruses and links between adeno-associated and avian parvoviruses. Journal of Virology 75:2729–2740
    [Google Scholar]
15. Lukashov V. V., Kuiken C. L., Goudsmit J. 1995; Intrahost human immunodeficiency virus type 1 evolution is related to length of the immunocompetent period. Journal of Virology 69:6911–6916
    [Google Scholar]
16. Lukashov V. V., Kuiken C. L., Vlahov D., Coutinho R. A., Goudsmit J. 1996; Evidence for HIV type 1 strains of U. S. intravenous drug users as founders of AIDS epidemic among intravenous drug users in northern Europe. AIDS Research and Human Retroviruses 12:1179–1183
    [Google Scholar]
17. Matsui S. M., Greenberg H. B. 1996; Astroviruses. In Fields Virology pp 811–824 Edited by Fields B. N., Knipe D. M., Howley P. M. Philadelphia: Lippincott–Raven;
    [Google Scholar]
18. Mendez-Toss M., Romero-Guido P., Munguia M. E., Mendez E., Arias C. F. 2000; Molecular analysis of a serotype 8 human astrovirus genome. Journal of General Virology 81:2891–2897
    [Google Scholar]
19. Monceyron C., Grinde B., Jonassen T. O. 1997; Molecular characterisation of the 3′-end of the astrovirus genome. Archives of Virology 142:699–706
    [Google Scholar]
20. Oh D., Schreier E. 2001; Molecular characterization of human astroviruses in Germany. Archives of Virology 146:443–455
    [Google Scholar]
21. Thompson J. D., Higgins D. G., Gibson T. J. 1994; CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22:4673–4680
    [Google Scholar]
22. Walter J. E., Mitchell D. K., Guerrero M. L., Berke T., Matson D. O., Monroe S. S., Pickering L. K., Ruiz-Palacios G. 2001; Molecular epidemiology of human astrovirus diarrhea among children from a periurban community of Mexico City. Journal of Infectious Diseases 183:681–686
    [Google Scholar]
23. Wang Q. H., Kakizawa J., Wen L. Y., Shimizu M., Nishio O., Fang Z. Y., Ushijima H. 2001; Genetic analysis of the capsid region of astroviruses. Journal of Medical Virology 64:245–255
    [Google Scholar]
24. Willcocks M. M., Carter M. J. 1993; Identification and sequence determination of the capsid protein gene of human astrovirus serotype 1. FEMS Microbiology Letters 114:1–7
    [Google Scholar]
25. Willcocks M. M., Kurtz J. B., Lee T. W., Carter M. J. 1995; Prevalence of human astrovirus serotype 4: capsid protein sequence and comparison with other strains. Epidemiology and Infection 114:385–391
    [Google Scholar]