Genome Organization and Expression of Reverse Transcribing Elements: Variations and a Theme

References

1. Armour S. L., Melcher U., Pirone T. P., Lyttle D. J., Essenberg R. C. 1983; Helper component for aphid transmission encoded by region II of cauliflower mosaic virus DNA. Virology 129:25–30
   [Google Scholar]
2. Arya S. K., Guo C., Josephs S. F., Wong-Staal F. 1985; Trans-activator gene of human T-lymphotropic virus type III (HTLV-III). Science 229:69–73
   [Google Scholar]
3. Baltimore D. 1985; Retrovirus and retrotransposons: the role of reverse transcription in shaping the eukaryotic genome. Cell 40:481–482
   [Google Scholar]
4. Boeke J. D., Garfinkel D. J., Styles C. A., Fink G. R. 1985; Ty elements transpose through an RNA intermediate. Cell 40:491–500
   [Google Scholar]
5. Cappello J., Handlesman K., Lodish H. F. 1985; Sequence of Dictyostelium DIRS-1: an apparent retrotransposon with inverted terminal repeats and an internal circle junction sequence. Cell 43:105–115
   [Google Scholar]
6. Cattaneo R., Will H., Schaller H. 1984; Hepatitis B virus transcription in the infected liver. EMBO Journal 3:2191–2196
   [Google Scholar]
7. Clare J., Farabaugh P. 1985; Nucleotide sequence of a yeast Ty element: evidence for an unusual mechanism of gene expression. Proceedings of the National Academy of Sciences, U.S.A. 82:2829–2833
   [Google Scholar]
8. Copeland T. D., Morgan M. A., Oroszlan S. 1984; Complete amino acid sequence of the basic nucleic acid binding protein of feline leukemia virus. Virology 133:137–145
   [Google Scholar]
9. Covey S. N. 1985; Organization and expression of cauliflower mosaic virus. In Molecular Plant Virology vol 2 pp. 121–159 Edited by Davies J. W. Boca Raton: CRC Press;
   [Google Scholar]
10. Covey S. N. 1986; Amino acid sequence homology in the gag region of reverse transcribing elements and the coat protein gene of cauliflower mosaic virus. Nucleic Acids Research 14:623–633
    [Google Scholar]
11. Covey S. N., Hull R. 1985; Advances in cauliflower mosaic virus research. Oxford Surveys of Plant Molecular and Cellular Biology 2:339–346
    [Google Scholar]
12. Dixon L. K., Hohn T. 1984; Initiation of translation of the cauliflower mosaic virus genome from a polycistronic mRNA: evidence from deletion mutagenesis. EMBO Journal 3:2731–2736
    [Google Scholar]
13. Enders G. H., Ganem D., Varmus H. 1985; Mapping the major transcript of ground squirrel hepatitis virus: the presumptive template for reverse transcriptase is terminally redundant. Cell 42:297–308
    [Google Scholar]
14. Fisher A. G., Feinberg M. B., Josephs S. F., Harper M. E., Marselle L. M., Reyes G., Gonda M. A., Aldovini A., Debouk C., Gallo R. C., Wong-Staal F. 1986; The trans-activator gene of HTLV-III is essential for virus replication. Nature, London 320:367–370
    [Google Scholar]
15. Franck A., Guilley H., Jonard G., Richards K., Hirth L. 1980; Nucleotide sequence of cauliflower mosaic virus DNA. Cell 21:285–294
    [Google Scholar]
16. Garfinkel D. J., Boeke J. D., Fink G. R. 1985; Ty element transposition: reverse transcriptase and virus-like particles. Cell 42:507–517
    [Google Scholar]
17. Givord L., Xiong C., Giband M., Koenig I., Hohn T., Lebeurier G., Hirth L. 1984; A Second cauliflower mosaic virus gene product influences the structure of the viral inclusion body. EMBO Journal 3:1423–1427
    [Google Scholar]
18. Grandgenett D., Quinn T., Hippenmeyer J., Oroszlan S. 1985; Structural characterization of the avian retrovirus reverse transcriptase and endonuclease domains. Journal of Biological Chemistry 260:8243–8249
    [Google Scholar]
19. Haase A. T., Stowring L., Harris J. D., Traynor B., Ventura P., Peluso R., Brahic M. 1982; Visna DNA synthesis and the tempo of infection in vitro . Virology 119:399–410
    [Google Scholar]
20. Hahn P., Shepherd R. J. 1980; Phosphorylated proteins in cauliflower mosaic virus. Virology 107:295–297
    [Google Scholar]
21. Harris J. D., Blum H., Scott J., Traynor B., Ventura P., Haase A. 1984; Slow virus visna: reproduction in vitro of virus from extrachromosomal DNA. Proceedings of the National Academy of Sciences, U.S.A. 81:7212–7215
    [Google Scholar]
22. Hauber J., Nelbock-Hochstetter P., Feldman H. 1985; Nucleotide sequence and characteristics of a Ty element from yeast. Nucleic Acids Research 13:2745–2758
    [Google Scholar]
23. Henderson L. E., Copeland T. D., Sowder R. C., Smythers G. W., Oroszlan S. 1981; Primary structure of the low molecular weight nucleic acid-binding proteins from murine leukemia viruses. Journal of Biological Chemistry 256:8400–8406
    [Google Scholar]
24. Hirochika H., Takatsuji H., Ubasawa A., Ikeda J. -E. 1985; Site–specific deletion in cauliflower mosaic virus DNA: possible involvement of RNA splicing and reverse transcription. EMBO Journal 4:1673–1680
    [Google Scholar]
25. Hodgson C. P., Elder P. K., Ono T., Foster D. N., Getz M. J. 1983; Structure and expression of mouse VL30 genes. Molecular and Cell Biology 3:2221–2231
    [Google Scholar]
26. Hohn T., Hohn B., Pfeifffer P. 1985; Reverse transcription in CaMV. Trends in Biochemical Sciences 4:205–209
    [Google Scholar]
27. Hull R., Covey S. N. 1985; Cauliflower mosaic virus: pathways of infection. BioEssays 3:160–163
    [Google Scholar]
28. Jacks T., Varmus H. E. 1985; Expression of the Rous sarcoma virus pol gene by ribosomal frameshifting. Science 230:1237–1242
    [Google Scholar]
29. Johns M. A., Mottinger J., Freeling M. 1985; A low copy number, copia-like transposon in maize. EMBO Journal 4:1093–1102
    [Google Scholar]
30. Levin J. G., Hu S. C., Rein A., Messer L. I., Gerwin B. I. 1984; Murine leukemia virus mutant with a frameshift in the reverse transcriptase coding region: implications for pol gene structure. Journal of Virology 51:470–478
    [Google Scholar]
31. Loeb D. D., Padgett R. W., Hardies S. C., Shehee W. R., Comer M. B., Edgell M. H., Hutchinson C. A. 1986; The sequence of a large L1MD element reveals a tandemly repeated 5′ end and several features found in retrotransposons. Molecular and Cellular Biology 6:168–182
    [Google Scholar]
32. Mason W. S., Taylor J. M., Hull R. 1986; Retroid virus genome replication. Advances in Virus Research (in press)
    [Google Scholar]
33. Maule A. J. 1985; Replication of caulimoviruses in plants and protoplasts. In Molecular Plant Virology vol 2 pp. 161–190 Edited by Davies J. W. Boca Raton: CRC Press;
    [Google Scholar]
34. Mellor J., Malim M. H., Gull K., Tuite M. G., Mcready S., Dibbayawan T., Kingsman S. M., Kingsman A. J. 1985a; Reverse transcriptase activity and Ty RNA are associated with virus-like particles in yeast. Nature, London 318:583–586
    [Google Scholar]
35. Mellor J., Fulton S. M., Dobson M. J., Wilson W., Kingsman S. M., Kingsman A. J. 1985b; A retrovirus-like strategy for expression of a fusion protein encoded by yeast transposon Ty 1. Nature, London 313:243–246
    [Google Scholar]
36. Mount S. M., Rubin G. M. 1985; Complete nucleotide sequence of the Drosophila transposable element copia: homology between copia and retroviral proteins. Molecular and Cellular Biology 5:1630–1638
    [Google Scholar]
37. Olszewski N. E., Guilfoyle T. J. 1983; Nuclei purified from cauliflower mosaic virus-infected turnip leaves contain subgenomic, covalently-closed circular cauliflower mosaic virus DNAs. Nucleic Acids Research 11:8901–8914
    [Google Scholar]
38. Olszewski N., Hagen G., Guilfoyle T. J. 1982; A transcriptionally active, covalently closed minichromosome of cauliflower mosaic virus DNA isolated from turnip leaves. Cell 29:395–402
    [Google Scholar]
39. Ono M., Toh H., Miyata T., Awaya T. 1985; Nucleotide sequence of the Syrian hamster intracistemal A-particle gene: close evolutionary relationship of type A particle gene to types B and D oncovirus genes. Journal of Virology 55:387–394
    [Google Scholar]
40. Plant A. L., Covey S. N., Grierson D. 1985; Detection of a subgenomic mRNA for gene V, the putative reverse transcriptase gene of cauliflower mosaic virus. Nucleic Acids Research 13:8305–8321
    [Google Scholar]
41. Rabson A. B., Martin M. A. 1985; Molecular organization of the AIDS retrovirus. Cell 40:477–480
    [Google Scholar]
42. Rollo F., Vovey S. N. 1985; Cauliflower mosaic virus DNA persists as supercoiled forms in cultured turnip cells. Journal of General Virology 66:603–608
    [Google Scholar]
43. Saigo K., Kugimiya W., Matsuo Y., Inouye S., Yoshioka K., Yuki S. 1984; Identification of the coding sequence for a reverse transcriptase-like enzyme in a transposable genetic element in Drosophila melanogaster . Nature, London 312:659–661
    [Google Scholar]
44. Seeger C., Ganem D., Varmus H. A. 1984; Nucleotide sequence of an infectious molecularly cloned genome of ground squirrel hepatitis virus. Journal of Virology 51:367–375
    [Google Scholar]
45. Shepherd N. S., Schwarz-Sommer Z., Vel Spalve J. B., Gupta M., Wienand U., Saedler H. 1984; Similarity of the Cin I repetitive family of Zea mays to eukaryotic transposable elements. Nature, London 307:185–187
    [Google Scholar]
46. Sieg K., Gronenborn B. 1982; Introduction and propagation of foreign DNA in plants using cauliflower mosaic virus as a vector. Abstract. NATO/FEBS Course on Structure and Function of Plant Genomes p 154
    [Google Scholar]
47. Sodroski J. G., Rosen C. A., Haseltine W. A. 1984; Trans-acting transcriptional activation of the long terminal repeat of human T-lymphotropic viruses in infected cells. Science 225:381–385
    [Google Scholar]
48. Sodroski J. G., Patarca R., Wong-Staal F., Rosen C. A., Haseltine W. A. 1985; Location of the trans activating region on the genome of human T-cell lympotropic virus type III. Science 229:74–77
    [Google Scholar]
49. Temin H. M. 1974; On the origin of RNA tumor viruses. Annual Review of Genetics 8:155–177
    [Google Scholar]
50. Tiollais P., Pourcel C., Dejean A. 1985; The hepatitis B virus. Nature, London 317:489–495
    [Google Scholar]
51. Toh H., Hayashida H., Miyata T. 1983; Sequence homology between retroviral reverse transcriptase and putative polymerases of hepatitis B virus and cauliflower mosaic virus. Nature, London 305:827–829
    [Google Scholar]
52. Varmus H. E. 1985; Reverse transcriptase rides again. Nature, London 314:583–584
    [Google Scholar]
53. Weiss R., Teich N., Varmus H., Coffin J. (editors) 1982 RNA Tumor Viruses vol 1 New York: Cold Spring Harbor Laboratory;
    [Google Scholar]
54. Weiss R., Teich N., Varmus H., Coffin J. (editors) 1985 RNA Tumor Viruses vol 2 supplements New York: Cold Spring Harbor Laboratory;
    [Google Scholar]
55. Woolston C. J., Covey S. N., Penswick J. R., Davies J. W. 1983; Aphid transmission and a polypeptide are specified by a defined region of the cauliflower mosaic virus genome. Gene 23:15–23
    [Google Scholar]
56. Xiong C., Lebeurier G., Hirth L. 1984; Detection in vivo of a new gene product (gene III) of cauliflower mosaic virus. Proceedings of the National Academy of Sciences, U.S.A. 81:6608–6612
    [Google Scholar]
57. Yoshinaka Y., Katoh I., Copeland T. D., Oroszlan S. 1985; Murine leukemia virus protease is encoded by the gag-pol gene and is synthesised through suppression of an amber termination codon. Proceedings of the National Academy of Sciences, U.S.A. 82:1618–1622
    [Google Scholar]