New defective RNAs from citrus tristeza virus: evidence for a replicase-driven template switching mechanism in their generation

References

1. Ballester-Olmos J. F., Pina J. A., Carbonell E. A., Moreno P., Hermoso de Mendoza A., Cambra M., Navarro L. 1993; Biological diversity of citrus tristeza virus (CTV) isolates in Spain. Plant Pathology 42:219–229
   [Google Scholar]
2. Devereux J., Haeberli P., Smithies O. 1984; A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Research 12:387–395
   [Google Scholar]
3. Febres V. J., Ashoulin L., Mawassi M., Frank A., Bar-Joseph M., Manjunath K. L., Lee R. F., Niblett C. L. 1996; The p27 protein is present at one end of citrus tristeza virus particles. Phytopathology 86:1331–1335
   [Google Scholar]
4. Graves M. V., Roossinck M. J. 1995; Characterisation of defective RNAs derived from RNA 3 of the Fny strain of cucumber mosaic cucumovirus. Journal of Virology 69:4746–4751
   [Google Scholar]
5. Guerri J., Moreno P., Munoz N., Martinez M. E. 1991; Variability among Spanish citrus tristeza virus isolates revealed by double-stranded RNA analysis. Plant Pathology 40:38–44
   [Google Scholar]
6. Hernandez C., Carette J. A., Brown D. J. F., Bol J. F. 1996; Serial passage of tobacco rattle virus under different selection conditions results in deletion of structural and nonstructural genes in RNA 2. Journal of Virology 70:4933–4940
   [Google Scholar]
7. Hilf M. E., Karasev A. V., Pappu H. R., Gumpf D. J., Niblett C. L., Garnsey S. M. 1995; Characterization of citrus tristeza virus subgenomic RNAs in infected tissue. Virology 208:576–582
   [Google Scholar]
8. Hillman B. I., Carrington J. C., Morris T. J. 1987; A defective interfering RNA that contains a mosaic of a plant virus genome. Cell 51:427–433
   [Google Scholar]
9. Karasev A. V., Boyko V. P., Gowda S., Nikolaeva O. V., Hilf M. E., Koonin E. V., Niblett C. L., Cline K., Gumpf D. J., Lee R. F., Garnsey S. M., Lewandowski D. J., Dawson W. O. 1995; Complete sequence of the citrus tristeza virus RNA genome. Virology 208:511–520
   [Google Scholar]
10. Mawassi M., Karasev A. V., Mietkiewska E., Gafny R., Lee R. F., Dawson W. O., Bar-Joseph M. 1995a; Defective RNA molecules associated with citrus tristeza virus. Virology 208:383–387
    [Google Scholar]
11. Mawassi M., Mietkiewska E., Hilf M. E., Ashoulin L., Karasev A. V., Gafny R., Lee R. F., Garnsey S. M., Dawson W. O., Bar-Joseph M. 1995b; Multiple species of defective RNAs in plants infected with citrus tristeza virus. Virology 214:264–268
    [Google Scholar]
12. Mawassi M., Mietkiewska E., Gofman R., Yang G., Bar-Joseph M. 1996; Unusual sequence relationships between two isolates of citrus tristeza virus. Journal of General Virology 77:2359–2364
    [Google Scholar]
13. Moreno P., Guerri J., Munoz N. 1990; Identification of Spanish strains of citrus tristeza virus (CTV) by analysis of double-stranded RNAs (dsRNA). Phytopathology 80:477–482
    [Google Scholar]
14. Moreno P., Guerri J., Ballester-Olmos J. F., Albiach R., Martinez M. E. 1993a; Separation and interference of strains from a citrus tristeza virus isolate evidenced by biological activity and double stranded RNA (dsRNA) analysis. Plant Pathology 42:35–41
    [Google Scholar]
15. Moreno P., Guerri J., Ballester-Olmos J. F., Fuertes-Polo C., Albiach R., Martínez M. E. 1993b; Variations in pathogenicity and double stranded RNA (dsRNA) patterns of citrus tristeza virus isolates induced by host passage. In Proceedings of the 12th Conference of the International Organization of Citrus Virologists pp 8–15 Edited by Moreno P., da Graga J. V., Timmer L. W. Riverside, CA: IOCV;
    [Google Scholar]
16. Nagy P. D., Bujarski J. J. 1995; Efficient system of homologous RNA recombination in brome mosaic virus: sequence and structure requirements and accuracy of crossovers. Journal of Virology 69:131–140
    [Google Scholar]
17. Nagy P. D., Simon A. E. 1997; New insights into the mechanisms of RNA recombination. Virology 235:1–9
    [Google Scholar]
18. Pappu H. R., Karasev A. V., Anderson E. J., Pappu S. S., Hilf M. E., Febres V. J., Eckloff R. M. G., McCaffery M., Boyko V., Gowda S., Dolja V. V., Koonin E. V., Gumpf D. J., Cline K. C., Garnsey S. M., Dawson W. O. 1994; Nucleotide sequence and organization of eight 3′ open reading frames of the citrus tristeza closterovirus genome. Virology 199:35–46
    [Google Scholar]
19. Raffo A. J., Dawson W. O. 1991; Construction of tobacco mosaic virus subgenomic replicons that are replicated and spread systemically in tobacco plants. Virology 184:277–289
    [Google Scholar]
20. Resende R. de O., de Haan P., van de Vossen E., de Avila A. C., Goldbach R., Peters D. 1992; Defective interfering L RNA segments of tomato spotted wilt virus retain both virus genome termini and have extensive internal deletions. Journal of General Virology 73:2509–2516
    [Google Scholar]
21. Roistacher C. N., Moreno P. 1991; The worldwide threat from destructive isolates of citrus tristeza virus. A review. In Proceedings of the 11th Conference of the International Organization of Citrus Virologists pp 7–19 Edited by Brlansky R. H., Lee R. F., Timmer L. W. Riverside, CA: IOCV;
    [Google Scholar]
22. Romero J., Huang Q., Pogany J., Bujarski J. J. 1993; Characterization of defective interfering RNA components that increase symptom severity of broad bean mottle virus infections. Virology 194:576–584
    [Google Scholar]
23. Scholthof K.-B. G., Scholthof H. B., Jackson A. O. 1995; The effect of defective interfering RNAs on the accumulation of tomato bushy stunt virus proteins and implications for disease attenuation. Virology 211:324–328
    [Google Scholar]
24. White K. A., Bancroft J. B., Mackie G. A. 1991; Defective RNAs of clover yellow mosaic virus encode nonstructural/coat protein fusion products. Virology 183:479–486
    [Google Scholar]
25. Yang G., Mawassi M., Ashoulin L., Gafny R., Gaba V., Gal-On A., Bar-Joseph M. 1997a; A cDNA clone from a defective RNA of citrus tristeza virus is infective in the presence of the helper virus. Journal of General Virology 78:1765–1769
    [Google Scholar]
26. Yang G., Mawassi M., Gofman R., Gafny R., Bar-Joseph M. 1997b; Involvement of subgenomic mRNA in the generation of a variable population of defective citrus tristeza virus molecules. Journal of Virology 71:9800–9802
    [Google Scholar]
27. Zucker M. 1989; On finding all suboptimal foldings of an RNA molecule. Science 22448–52
    [Google Scholar]