Full genome-based genotyping system for rotavirus H and detection of potential gene recombination in nonstructural protein 3 between porcine rotavirus H and rotavirus C

References

1. Estes MK, Cohen J. Rotavirus gene structure and function. Microbiol Rev 1989; 53:410–449[PubMed]
   [Google Scholar]
2. Matthijnssens J, Otto PH, Ciarlet M, Desselberger U, van Ranst M et al. VP6-sequence-based cutoff values as a criterion for rotavirus species demarcation. Arch Virol 2012; 157:1177–1182 [View Article][PubMed]
   [Google Scholar]
3. Mihalov-Kovács E, Gellért Á, Marton S, Farkas SL, Fehér E et al. Candidate new rotavirus species in sheltered dogs, Hungary. Emerg Infect Dis 2015; 21:660–663 [View Article][PubMed]
   [Google Scholar]
4. Pesavento JB, Crawford SE, Estes MK, Prasad BV. Rotavirus proteins: structure and assembly. Curr Top Microbiol Immunol 2006; 309:189–219[PubMed]
   [Google Scholar]
5. Wakuda M, Ide T, Sasaki J, Komoto S, Ishii J et al. Porcine rotavirus closely related to novel group of human rotaviruses. Emerg Infect Dis 2011; 17:1491–1493 [View Article][PubMed]
   [Google Scholar]
6. Yang H, Makeyev EV, Kang Z, Ji S, Bamford DH et al. Cloning and sequence analysis of dsRNA segments 5, 6 and 7 of a novel non-group A, B, C adult rotavirus that caused an outbreak of gastroenteritis in China. Virus Res 2004; 106:15–26 [View Article][PubMed]
   [Google Scholar]
7. Alam MM, Kobayashi N, Ishino M, Ahmed MS, Ahmed MU et al. Genetic analysis of an ADRV-N-like novel rotavirus strain B219 detected in a sporadic case of adult diarrhea in Bangladesh. Arch Virol 2007; 152:199–208 [View Article][PubMed]
   [Google Scholar]
8. Jiang S, Ji S, Tang Q, Cui X, Yang H et al. Molecular characterization of a novel adult diarrhoea rotavirus strain J19 isolated in China and its significance for the evolution and origin of group B rotaviruses. J Gen Virol 2008; 89:2622–2629 [View Article][PubMed]
   [Google Scholar]
9. Marthaler D, Rossow K, Culhane M, Goyal S, Collins J et al. Widespread rotavirus H in commercially raised pigs, United States. Emerg Infect Dis 2014; 20:1203–1206 [View Article]
   [Google Scholar]
10. Molinari BL, Alfieri AF, Alfieri AA. Genetic variability of VP6, VP7, VP4, and NSP4 genes of porcine rotavirus group H detected in Brazil. Virus Res 2015; 197:48–53 [View Article][PubMed]
    [Google Scholar]
11. Nyaga MM, Peenze I, Potgieter CA, Seheri LM, Page NA et al. Complete genome analyses of the first porcine rotavirus group H identified from a South African pig does not provide evidence for recent interspecies transmission events. Infect Genet Evol 2016; 38:1–7 [View Article][PubMed]
    [Google Scholar]
12. Phan MVT, Anh PH, Cuong NV, Munnink BBO, van der Hoek L et al. Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection. Virus Evol 2016; 2:vew027 [View Article][PubMed]
    [Google Scholar]
13. Yinda CK, Ghogomu SM, Conceição-Neto N, Beller L, Deboutte W et al. Cameroonian fruit bats habor divergent viruses, including rotavirus H, bastroviruses, and picobirnaviruses using an alternative genetic code. Virus Evol 2018; 3:vey008
    [Google Scholar]
14. Kobayashi N, Alam M, Kojima K, Mise K, Ishino M et al. Genomic diversity and evolution of rotaviruses: an overview. In Kobayashi N. (editor) Genomic Diversity and Molecular Epidemiology of Rotaviruses Trivandrum, India: Research Signpost; 2003 pp. 75–90
    [Google Scholar]
15. Suzuki T, Hasebe A. A provisional complete genome-based genotyping system for rotavirus species C from terrestrial mammals. J Gen Virol 2017; 98:2647–2662 [View Article][PubMed]
    [Google Scholar]
16. Soma J, Tsunemitsu H, Miyamoto T, Suzuki G, Sasaki T et al. Whole-genome analysis of two bovine rotavirus C strains: Shintoku and Toyama. J Gen Virol 2013; 94:128–135 [View Article][PubMed]
    [Google Scholar]
17. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
18. Matthijnssens J, Ciarlet M, Heiman E, Arijs I, Delbeke T et al. Full genome-based classification of rotaviruses reveals a common origin between human Wa-Like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 2008; 82:3204–3219 [View Article][PubMed]
    [Google Scholar]
19. Matthijnssens J, Ciarlet M, Rahman M, Attoui H, Bányai K et al. Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Arch Virol 2008; 153:1621–1629 [View Article][PubMed]
    [Google Scholar]