Recombination profiles between Tomato yellow leaf curl virus and Tomato yellow leaf curl Sardinia virus in laboratory and field conditions: evolutionary and taxonomic implications

References

1. Accotto G. P., Bragaloni M., Luison D., Davino S., Davino M. 2003; First report of Tomato yellow leaf curl virus (TYLCV) in Italy. Plant Pathol 52:799 [View Article]
   [Google Scholar]
2. Baird H. A., Galetto R., Gao Y., Simon-Loriere E., Abreha M., Archer J., Fan J., Robertson D. L., Arts E. J., Negroni M. 2006; Sequence determinants of breakpoint location during HIV-1 intersubtype recombination. Nucleic Acids Res 34:5203–5216 [View Article][PubMed]
   [Google Scholar]
3. Davino S., Napoli C., Davino M., Accotto G. P. 2006; Spread of Tomato yellow leaf curl virus in Sicily: partial displacement of another geminivirus originally present. Eur J Plant Pathol 114:293–299 [View Article]
   [Google Scholar]
4. Davino S., Davino M., Accotto G. P. 2008; A single-tube PCR assay for detecting viruses and their recombinants that cause tomato yellow leaf curl disease in the Mediterranean basin. J Virol Methods 147:93–98 [View Article][PubMed]
   [Google Scholar]
5. Davino S., Napoli C., Dellacroce C., Miozzi L., Noris E., Davino M., Accotto G. P. 2009; Two new natural begomovirus recombinants associated with the tomato yellow leaf curl disease co-exist with parental viruses in tomato epidemics in Italy. Virus Res 143:15–23 [View Article][PubMed]
   [Google Scholar]
6. Fauquet C. M., Sawyer S., Idris A. M., Brown J. K. 2005; Sequence analysis and classification of apparent recombinant begomoviruses infecting tomato in the Nile and Mediterranean basins. Phytopathology 95:549–555 [View Article][PubMed]
   [Google Scholar]
7. García-Andrés S., Monci F., Navas-Castillo J., Moriones E. 2006; Begomovirus genetic diversity in the native plant reservoir Solanum nigrum: evidence for the presence of a new virus species of recombinant nature. Virology 350:433–442 [View Article][PubMed]
   [Google Scholar]
8. García-Andrés S., Accotto G. P., Navas-Castillo J., Moriones E. 2007a; Founder effect, plant host, and recombination shape the emergent population of begomoviruses that cause the tomato yellow leaf curl disease in the Mediterranean basin. Virology 359:302–312 [View Article][PubMed]
   [Google Scholar]
9. García-Andrés S., Tomás D. M., Sánchez-Campos S., Navas-Castillo J., Moriones E. 2007b; Frequent occurrence of recombinants in mixed infections of tomato yellow leaf curl disease-associated begomoviruses. Virology 365:210–219 [View Article][PubMed]
   [Google Scholar]
10. García-Arenal F., Fraile A., Malpica J. M. 2001; Variability and genetic structure of plant virus populations. Annu Rev Phytopathol 39:157–186[PubMed] [CrossRef]
    [Google Scholar]
11. Huson D. H., Bryant D. 2006; Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23:254–267 [View Article][PubMed]
    [Google Scholar]
12. Kheyr-Pour A., Bendahmane M., Matzeit V., Accotto G. P., Crespi S., Gronenborn B. 1991; Tomato yellow leaf curl virus from Sardinia is a whitefly-transmitted monopartite geminivirus. Nucleic Acids Res 19:6763–6769 [View Article][PubMed]
    [Google Scholar]
13. Lefeuvre P., Lett J.-M., Varsani A., Martin D. P. 2009; Widely conserved recombination patterns among single-stranded DNA viruses. J Virol 83:2697–2707 [View Article][PubMed]
    [Google Scholar]
14. Martin D. P., Biagini P., Lefeuvre P., Golden M., Roumagnac P., Varsani A. 2011a; Recombination in eukaryotic single stranded DNA viruses. Viruses 3:1699–1738 [View Article][PubMed]
    [Google Scholar]
15. Martin D. P., Lefeuvre P., Varsani A., Hoareau M., Semegni J.-Y., Dijoux B., Vincent C., Reynaud B., Lett J.-M. 2011b; Complex recombination patterns arising during geminivirus coinfection preserve and demarcate biologically important intra-genome interaction networks. PLoS Pathog 7:1–14 [View Article]
    [Google Scholar]
16. Monci F., Sánchez-Campos S., Navas-Castillo J., Moriones E. 2002; A natural recombinant between the geminiviruses Tomato yellow leaf curl Sardinia virus and Tomato yellow leaf curl virus exhibits a novel pathogenic phenotype and is becoming prevalent in Spanish populations. Virology 303:317–326 [View Article][PubMed]
    [Google Scholar]
17. Morilla G., Krenz B., Jeske H., Bejarano E. R., Wege C. 2004; Tête à tête of Tomato yellow leaf curl virus and Tomato yellow leaf curl Sardinia virus in single nuclei. J Virol 78:10715–10723 [View Article][PubMed]
    [Google Scholar]
18. Nagy P. D. 2008; Recombination in plant RNA viruses. In Plant Virus Evolution pp. 133–156 Edited by Roossinck M. J. Berlin, Heidelberg: Springer-Verlag; [View Article]
    [Google Scholar]
19. Noris E., Hidalgo E., Accotto G. P., Moriones E. 1994; High similarity among the tomato yellow leaf curl virus isolates from the west Mediterranean basin: the nucleotide sequence of an infectious clone from Spain. Arch Virol 135:165–170 [View Article][PubMed]
    [Google Scholar]
20. Padidam M., Sawyer S., Fauquet C. M. 1999; Possible emergence of new geminiviruses by frequent recombination. Virology 265:218–225 [View Article][PubMed]
    [Google Scholar]
21. Sánchez-Campos S., Díaz J. A., Monci F., Bejarano E. R., Reina J., Navas-Castillo J., Aranda M. A., Moriones E. 2002; High genetic stability of the begomovirus Tomato yellow leaf curl Sardinia virus in southern Spain over an 8-year period. Phytopathology 92:842–849 [View Article][PubMed]
    [Google Scholar]
22. Zhou X. P., Liu Y. L., Calvert L., Munoz C., Otim-Nape G. W., Robinson D. J., Harrison B. D. 1997; Evidence that DNA-A of a geminivirus associated with severe cassava mosaic disease in Uganda has arisen by interspecific recombination. J Gen Virol 78:2101–2111[PubMed]
    [Google Scholar]