Genomic analysis of two novel human enterovirus C genotypes found in respiratory samples from Peru

References

1. Arnold K., Bordoli L., Kopp J., Schwede T. 2006; The swiss-model workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22:195–201 [View Article][PubMed]
   [Google Scholar]
2. Bessaud M., Joffret M. L., Holmblat B., Razafindratsimandresy R., Delpeyroux F. 2011; Genetic relationship between cocirculating human enteroviruses species C. PLoS ONE 6:e24823 [View Article][PubMed]
   [Google Scholar]
3. Briese T., Palacios G., Kokoris M., Jabado O., Liu Z., Renwick N., Kapoor V., Casas I., Pozo F. other authors 2005; Diagnostic system for rapid and sensitive differential detection of pathogens. Emerg Infect Dis 11:310–313 [View Article][PubMed]
   [Google Scholar]
4. Brown B., Oberste M. S., Maher K., Pallansch M. A. 2003; Complete genomic sequencing shows that polioviruses and members of human enterovirus species C are closely related in the noncapsid coding region. J Virol 77:8973–8984 [View Article][PubMed]
   [Google Scholar]
5. Grard G., Drexler J. F., Lekana-Douki S., Caron M., Lukashev A., Nkoghe D., Gonzalez J. P., Drosten C., Leroy E. 2010; Type 1 wild poliovirus and putative enterovirus 109 in an outbreak of acute flaccid paralysis in Congo, October–November 2010. Euro Surveill 15:19723[PubMed]
   [Google Scholar]
6. Kaida A., Kubo H., Sekiguchi J., Hase A., Iritani N. 2012; Enterovirus 104 infection in adult, Japan, 2011. Emerg Infect Dis 18:882–883 [View Article][PubMed]
   [Google Scholar]
7. Knowles N. J., Hovi T., Hyypiä T., King A. M. Q., Lindberg A. M., Pallansch M. A., Palmenberg A. C., Simmonds P., Skern T. other authors 2012; Picornaviridae . In Virus Taxonomy: Classification and Nomenclature of Viruses: Ninth Report of the International Committee on Taxonomy of Viruses pp. 855–880 Edited by King A. M. Q., Adams M. J., Carstens E. B., Lefkowitz E. J. San Diego, CA: Elsevier;
   [Google Scholar]
8. Lukashev A. N. 2005; Role of recombination in evolution of enteroviruses. Rev Med Virol 15:157–167 [View Article][PubMed]
   [Google Scholar]
9. Lukashev A. N., Lashkevich V. A., Ivanova O. E., Koroleva G. A., Hinkkanen A. E., Ilonen J. 2005; Recombination in circulating human enterovirus B: independent evolution of structural and non-structural genome regions. J Gen Virol 86:3281–3290 [View Article][PubMed]
   [Google Scholar]
10. Minor P. D., Ferguson M., Evans D. M., Almond J. W., Icenogle J. P. 1986; Antigenic structure of polioviruses of serotypes 1, 2 and 3. J Gen Virol 67:1283–1291 [View Article][PubMed]
    [Google Scholar]
11. Oberste M. S., Maher K., Kilpatrick D. R., Flemister M. R., Brown B. A., Pallansch M. A. 1999a; Typing of human enteroviruses by partial sequencing of VP1. J Clin Microbiol 37:1288–1293[PubMed]
    [Google Scholar]
12. Oberste M. S., Maher K., Kilpatrick D. R., Pallansch M. A. 1999b; Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification. J Virol 73:1941–1948[PubMed]
    [Google Scholar]
13. Oberste M. S., Peñaranda S., Maher K., Pallansch M. A. 2004; Complete genome sequences of all members of the species human enterovirus A. J Gen Virol 85:1597–1607 [View Article][PubMed]
    [Google Scholar]
14. Page G. S., Mosser A. G., Hogle J. M., Filman D. J., Rueckert R. R., Chow M. 1988; Three-dimensional structure of poliovirus serotype 1 neutralizing determinants. J Virol 62:1781–1794[PubMed]
    [Google Scholar]
15. Pallansch M. R., Roos R. 2007; Enteroviruses. In Fields Virology, 5th edn. pp. 839–893 Edited by Knipe D. M., Howley P. M. Philadelphia, PA: Lippincott Williams & Wilkins;
    [Google Scholar]
16. Pankovics P., Boros A., Szabó H., Székely G., Gyurkovits K., Reuter G. 2012; Human enterovirus 109 (EV109) in acute paediatric respiratory disease in Hungary. Acta Microbiol Immunol Hung 59:285–290 [View Article][PubMed]
    [Google Scholar]
17. Piralla A., Rovida F., Baldanti F., Gerna G. 2010; Enterovirus genotype EV-104 in humans, Italy, 2008–2009. Emerg Infect Dis 16:1018–1021 [View Article][PubMed]
    [Google Scholar]
18. Piralla A., Lilleri D., Sarasini A., Marchi A., Zecca M., Stronati M., Baldanti F., Gerna G. 2012; Human rhinovirus and human respiratory enterovirus (EV68 and EV104) infections in hospitalized patients in Italy, 2008–2009. Diagn Microbiol Infect Dis 73:162–167 [View Article][PubMed]
    [Google Scholar]
19. Racaniello V. 2007; Picornaviridae: the viruses and their replication. In Fields Virology, 5th edn. pp. 795–839 Edited by Knipe D. M., Howley P. M. Philadelphia, PA: Lippincott Williams & Wilkins;
    [Google Scholar]
20. Razuri H., Romero C., Tinoco Y., Guezala M. C., Ortiz E., Silva M., Reaves E., Williams M., Laguna-Torres V. A. other authors 2012; Population-based active surveillance cohort studies for influenza: lessons from Peru. Bull World Health Organ 90:318–320[PubMed]
    [Google Scholar]
21. Tamura K. D. J., Dudley J., Nei M., Kumar S. 2007; mega4: Molecular Evolutionary Genetics Analysis (mega) software version 4.0. Mol Biol Evol 24:1596–1599 [View Article][PubMed]
    [Google Scholar]
22. Tapparel C., Junier T., Gerlach D., Van-Belle S., Turin L., Cordey S., Mühlemann K., Regamey N., Aubert J. D. other authors 2009; New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses. Emerg Infect Dis 15:719–726 [View Article][PubMed]
    [Google Scholar]
23. Tokarz R., Firth C., Madhi S. A., Howie S. R., Wu W. Y., Sall A. A., Haq S., Briese T., Lipkin W. I. 2012; Worldwide emergence of multiple clades of enterovirus 68. J Gen Virol 93:1952–1958[PubMed] [CrossRef]
    [Google Scholar]
24. Yozwiak N. L., Skewes-Cox P., Gordon A., Saborio S., Kuan G., Balmaseda A., Ganem D., Harris E., DeRisi J. L. 2010; Human enterovirus 109: a novel interspecies recombinant enterovirus isolated from a case of acute pediatric respiratory illness in Nicaragua. J Virol 84:9047–9058 [View Article][PubMed]
    [Google Scholar]