RT Journal Article SR Electronic(1) A1 Zahn, Astrid A1 Li, Chengyao A1 Danso, Kwabena A1 Candotti, Daniel A1 Owusu-Ofori, Shirley A1 Temple, Jillian A1 Allain, Jean-PierreYR 2008 T1 Molecular characterization of occult hepatitis B virus in genotype E-infected subjects JF Journal of General Virology, VO 89 IS 2 SP 409 OP 418 DO https://doi.org/10.1099/vir.0.83347-0 PB Microbiology Society, SN 1465-2099, AB Occult hepatitis B virus (HBV) infection (OBI), defined as the presence of HBV DNA without detectable HBV surface antigen (HBsAg), is frequent in west Africa, where genotype E is prevalent. The prevalence of OBI in 804 blood donors and 1368 pregnant women was 1.7 and 1.5 %, respectively. Nine of 32 OBI carriers were evaluated with HBV serology, viral load and complete HBV genome sequence of two to five clones. All samples except one were anti-HBV core antigen-positive and three contained antibodies against HBsAg (anti-HBs). All strains were of genotype E and formed quasispecies with 0.20–1.28 % intra-sample sequence variation. Few uncommon mutations (absent in 23 genotype E reference sequences) were found across the entire genome. Two mutations in the core region encoded truncated or abnormal capsid protein, potentially affecting viral production, but were probably rescued by non-mutated variants, as found in one clone. No evidence of escape mutants was found in anti-HBs-carrying samples, as the ‘a’ region was consistently wild type. OBI carriers constitute approximately 10 % of all HBV DNA-viraemic adult Ghanaians. OBI carriers appear as a disparate group, with a very low viral load in common, but multiple origins reflecting decades of natural evolution in an area essentially devoid of human intervention., UL https://www.microbiologyresearch.org/content/journal/jgv/10.1099/vir.0.83347-0