1887

Abstract

A virus-specific small nucleic acid (strong-stop DNA) was identified in rice plants infected with rice tungro bacilliform virus, but not in the virus particles. This nucleic acid was shown to consist of about 595 deoxyribonucleotides with about 70 ribonucleotides covalently linked at the 5ʹ end. Hybridization with sequence-specific oligonucleotides showed that the ribonucleotides were from the plant cytoplasmic tRNA sequence. PCR analysis detected hairpin structures at the 3ʹ end of the DNA.

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1993-08-01
2024-05-09
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References

  1. Bao Y, Hull R. 1992; Characterization of the discontinuities in rice tungro bacilliform virus DNA.. Journal of General Virology 73:1297–1301
    [Google Scholar]
  2. Canaday J, Guillemaut P, Weil JH. 1980; The nucleotide sequence of the initiator transfer RNAs from bean cytoplasm and chloroplasts.. Nucleic Acids Research 8:999–1008
    [Google Scholar]
  3. Condit C, Meagher RB. 1983; Multiple, discrete 35S transcripts of cauliflower mosaic virus.. Molecular and Applied Genetics 2:301–314
    [Google Scholar]
  4. Covey SN, Turner DS. 1986; Hairpin DNAs of cauliflower mosaic virus generated by reverse transcription in vivo.. EMBO Journal 5:2763–2768
    [Google Scholar]
  5. Covey SN, Lomonossoff GP, Hull R. 1981; Characterization of cauliflower mosaic virus DNA sequences which encode major polyadenylated transcripts.. Nucleic Acids Research 9:6735–6747
    [Google Scholar]
  6. Covey SN, Turner DS, Mulder G. 1983; A small DNA molecule containing covalently linked ribonucleotides originates from the large intergenic region of the cauliflower mosaic virus genome.. Nucleic Acids Research 11:251–264
    [Google Scholar]
  7. Dasgupta I, Hull R, Eastop S, Poggi-Pollini C, Blakebrough M, Boulton MI, Davies JW. 1991; Rice tungro bacilliform virus DNA independently infects rice after Agrobacterium-mediated transfer.. Journal of General Virology 72:1215–1221
    [Google Scholar]
  8. Feinberg AP, Vogelstein B. 1983; A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.. Analytical Biochemistry 132:6–13
    [Google Scholar]
  9. Gaastra W, Jorgensen PL. 1984; The extraction and isolation of DNA from gels.. In Methods in Molecular Biology pp vol 2:67–76 Edited by J. M. Walker. Clifton: Humana Press..
    [Google Scholar]
  10. Guilley H, Dudley RK, Jonard G, Balazs E, Richards KE. 1982; Transcription of cauliflower mosaic virus DNA: detection of promoter sequences, and characterization of transcripts.. Cell 30:763–773
    [Google Scholar]
  11. Guilley H, Richards KE, Jonard G. 1983; Observations concerning the discontinuous DNAs of cauliflower mosaic virus.. EMBO Journal 2:277–282
    [Google Scholar]
  12. Harrison BD, Finch JT, Gibbs AJ, Hollings M, Shepherd RJ, Valenta V, Wetter C. 1971; Sixteen groups of plant viruses. . Virology 45:356–363
    [Google Scholar]
  13. Hay JM, Jones MC, Blakebrough ML, Dasgupta I, Davies JW, Hull R. 1991; An analysis of the sequence of an infectious clone of rice tungro bacilliform virus, a plant pararetrovirus.. Nucleic Acids Research 19:2615–2621
    [Google Scholar]
  14. Hsiao K. 1991; A fast and simple procedure for sequencing doublestranded DNA with Sequenase. . Nucleic Acids Research 19:2787
    [Google Scholar]
  15. Hull R, Covey SN. 1983a; Does cauliflower mosaic virus replicate by reverse transcription?. Trends in Biochemical Sciences 8:119–121
    [Google Scholar]
  16. Hull R, Covey SN. 1983b; Replication of cauliflower mosaic virus DNA.. Science Progress, Oxford 68:403–422
    [Google Scholar]
  17. Hull R, Will H. 1989; Molecular biology of viral and nonviral retroelements.. Trends in Genetics 5:357–359
    [Google Scholar]
  18. Jones MC, Gough K, Dasgupta I, Subba Rao BL, Cliffe J, Qu R, Shen P, Kaniewska M, Blakebrough M, Davies JW, Beachy RN, Hull R. 1991; Rice tungro disease is caused by an RNA and a DNA virus.. Journal of General Virology 72:757–761
    [Google Scholar]
  19. Kano H, Koizumi M, Noda H, Hibino H, Ishikawa K, Omura T, Cabauatan PQ, Koganezawa H. 1992; Nucleotide sequence of capsid protein gene of rice tungro bacilliform virus.. Archives of Virology 124:157–163
    [Google Scholar]
  20. Kumazawa Y, Yokogawa T, Tsurui H, Miura K, Watanabe K. 1992; Effect of the higher-order structure of tRNAs on the stability of hybrids with oligodeoxyribonucleotides: separation of tRNA by an efficient solution hybridization.. Nucleic Acids Research 20:2223–2232
    [Google Scholar]
  21. Lockhart BEL. 1990; Evidence for a double-stranded circular genome in a second group of plant viruses.. Phytopathology 80:127–131
    [Google Scholar]
  22. Marco Y, Howell SH. 1984; Intracellular forms of viral DNA consistent with a model of reverse transcriptional replication of the cauliflower mosaic virus genome.. Nucleic Acids Research 12:1517–1528
    [Google Scholar]
  23. Mason WS, Taylor JM, Hull R. 1987; Retroid virus genome replication. Advances in Virus Research 32:35–96
    [Google Scholar]
  24. Menissier J, De Murcia G, Lebeurier G, Hirth L. 1983; Electron microscopic studies of different topological forms of the cauliflower mosaic virus DNA: knotted encapsidated DNA and nuclear minichromosome.. EMBO Journal 2:1067–1071
    [Google Scholar]
  25. Olszewski N, Hagen G, Guilfoyle TJ. 1982; A transcriptionally active, covalently closed minichromosome of cauliflower mosaic virus DNA isolated from infected turnip leaves.. Cell 29:395–402
    [Google Scholar]
  26. Pfeiffer P, Hohn T. 1983; Involvement of reverse transcription in the replication of cauliflower mosaic virus: a detailed model and test of some aspects.. Cell 33:781–789
    [Google Scholar]
  27. Qu R, Bhattacharyya M, Laco GS, De Kochko A, Subba Rao BL, Kaniewska MB, Elmer JS, Rochester D, Smith CE, Beachy RN. 1991; Characterization of the genome of rice tungro bacilliform virus: comparison with Commelina yellow mottle virus and caulimoviruses.. Virology 185:354–364
    [Google Scholar]
  28. Sambrook J, Fritsch EF, Maniatis T. 1989 Molecular Cloning: A Laboratory Manual, 2nd edn. New York: Cold Spring Harbor Laboratory.;
    [Google Scholar]
  29. Simsek M, Petrissant G, RaiBhandary UT. 1973; Replacement of the sequence G-T-^-C-G(A)- by G-A-U-C-G- in initiator transfer RNA of rabbit-liver cytoplasm.. Proceedings of the National Academy of Sciences, U.S.A. 70:2600–2604
    [Google Scholar]
  30. Sprinzl M, Hartmann T, Weber J, Blank J, Zeidler R. 1989; Compilation of tRNA sequences of tRNA genes.. Nucleic Acids Research 17:r38–r39
    [Google Scholar]
  31. Temin HM. 1989; Retrons in bacteria. Nature, London 339:254–255
    [Google Scholar]
  32. Turner DS, Covey SN. 1984; A putative primer for the replication of cauliflower mosaic virus by reverse transcription is virion-associated.. FEBS Letters 165:285–289
    [Google Scholar]
  33. Turner DS, Covey SN. 1988; Discontinuous hairpin DNAs synthesised in vivo following specific and non-specific priming of cauliflower mosaic virus DNA ( + ) strands.. Virus Research 9:49–62
    [Google Scholar]
  34. Varmus H, Swanstrom R. 1982; Replication of retrovirus.. In RNA Tumor Viruses 2369–512 Edited by R. Weiss, N. Teich, H. Varmus & J. Coffin.. New York: Cold Spring Harbor Laboratory.;
    [Google Scholar]
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