Genome organization of a partitivirus from the filamentous ascomycete Atkinsonella hypoxylon

References

1. Ahlquist P., Dasgupta R., Kaesberg P. 1984; Nucleotide sequence of brome mosaic virus genome and its implications for virus replication. Journal of Molecular and Cellular Biology 172:369–383
   [Google Scholar]
2. Anzola J. V., Xu Z., Asamizu T., Nuss D. L. 1987; Segment-specific inverted repeats found adjacent to conserved terminal sequences in wound tumor virus genome and defective interfering RNAs. Proceedings of the National Academy of Sciences, USA 84:8301–8305
   [Google Scholar]
3. Bruenn J. A. 1993; A closely related group of RNA-dependent RNA polymerases from double-stranded RNA viruses. Nucleic Acids Research 21:5667–5669
   [Google Scholar]
4. Buck K. W. 1979; Virion-associated RNA polymerases of doublestranded RNA mycoviruses. In Fungal Viruses pp 62–77 Edited by Mohtoris H. P., Hollings M., Wood H. A. New York: Springer Verlag;
   [Google Scholar]
5. Buck K. W. 1986; Fungal virology–an overview. In Fungal Virology pp 1–84 Edited by Buck K. W. Boca Raton: CRC Press.;
   [Google Scholar]
6. Buck K. W., Ghabrial S. A. 1991a; Partitiviridae. In Classification and Nomenclature of Viruses. Fifth Report of the International Committee for the Taxonomy of Viruses. Archives of Virology Supplementum 2 pp 208–211 Edited by Francki R. B. I., Fauquet C. M., Knudsen D. L., Brown F. New York: Springer Verlag;
   [Google Scholar]
7. Buck K. W., Ghabrial S. A. 1991b; Totiviridae. In Classification and Nomenclature of Viruses.Fifth Report of the International Committee for the Taxonomy of Viruses. Archives of Virology Supplementum 2 pp 203–205 Edited by Francki R. I. B. Fauquet C. M., Knudsen D. L., Brown F. New York: Springer Verlag;
   [Google Scholar]
8. Buck K. W., Almond M. R., McFadden J. J. P., Romanos M. A., Rawlinson C. J. 1981; Properties of thirteen viruses and virus variants obtained from eight isolates of the wheat take-all fungus, Gaeumannomyces graminis var. tritici. Journal of General Virology 57:157–168
   [Google Scholar]
9. Carrington J. C., Dougherty W. G. 1987; Small nuclear inclusion protein encoded by a plant potyvirus genome is a protease. Journal of Virology 61:2540–2548
   [Google Scholar]
10. Clay K. 1984; The effect of the fungus Atkinsonella hypoxylon (Clavicepitacae) on the reproductive system and demography of the grass Danthonia spicata. New Phytologist 98:165–175
    [Google Scholar]
11. Diehl W. W. 1950 Balansia and the Balansiae in America Agriculture Monograph no. 4 United States Department of Agriculture; Washington, DC.:
    [Google Scholar]
12. Esteban L. M., Rodriguez-Couzino N., Esteban R. 1992; T double-stranded RNA sequence reveals that T and W dsRNAs form a new RNA family in Saccharomyces cerevisiae. Journal of Biological Chemistry 267:10874–10881
    [Google Scholar]
13. Felsenstein J. 1989; PHYLIP – phylogeny inference package (version 3.2). Cladistics 5:164–166
    [Google Scholar]
14. Frohman M. A., Dush M. K., Martin G. R. 1988; Rapid amplification of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer. Proceedings of the National Academy of Sciences, USA 85:8998–9002
    [Google Scholar]
15. Ghabrial S. A. 1994; New developments in fungal virology. Advances in Virus Research 43:303–388
    [Google Scholar]
16. Ghabrial S. A., Bozarth R. R., Buck K. W., Yamashita S., Martelli G. P., Milne R. J. 1994; Partitiviridae. In Sixth Report of the International Committee for the Taxonomy of Viruses Edited by Murphy F. A., Fauquet C. M., Bishop D. H. L., Ghabrial S. A., Jarvis A. W., Martelli G. P., Mayo M. P., Summers M. D. New York: Springer Verlag; (in press)
    [Google Scholar]
17. Higgins D. G., Bleasby A. J., Fuchs R. 1992; CLUSTAL V: improved software for multiple sequence alignments. CABIOS 8:189–191
    [Google Scholar]
18. Hillman B. I., Shapira R., Nuss D. L. 1990; Hypovirulence-associated suppression of host functions in Cryphonectria parasitica can be partially relieved by high light intensity. Phytopathology 80:950–956
    [Google Scholar]
19. Hillman B. I., Tian Y., Bedker P. J., Brown M. P. 1992; A North American hypovirulent isolate of the chestnut blight fungus with European isolate-related dsRNA. Journal of General Virology 73:681–686
    [Google Scholar]
20. Hillman B. I., Fulbright D. W., Nuss D. L., Van Alfen N. K. 1994; Hypoviridae. In Sixth Report of the International Committee for the Taxonomy of Viruses Edited by Murphy F. A. Fauquet C. M., Bishop D. H. L., Ghabrial S. A., Jarvis A. W., Martelli G. P., Mayo M. P., Summers M. D. New York: Springer Verlag; (in press)
    [Google Scholar]
21. Koonin E. V., Choi G. H., Nuss D. L., Shapira R., Carrington J. C. 1991; Evidence for common ancestry of a chestnut blight hypovirulence-associated double-stranded RNA and a group of positive-strand RNA plant viruses. Proceedings of the National Academy of Sciences, USA 88:10647–10651
    [Google Scholar]
22. Laemmli U. K. 1970; Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685
    [Google Scholar]
23. Lemke P. A. 1979; Co-evolution of fungi and their viruses. In Fungal Viruses pp 2–7 Edited by Molitoris H. P., Hollings M., Wood H. A. New York: Springer Verlag;
    [Google Scholar]
24. Leuchtmann A., Clay K. 1988; Experimental infection of host grasses and sedges with Atkinsonella hypoxylon and Balansia cyperi (Balansiae, Clavicipitaceae). Mycologia 80:291–297
    [Google Scholar]
25. Leuchtmann A., Clay K. 1989a; Morphological, cultural, and mating studies on Atkinsonella, including A. texensis. Mycologia 81:692–701
    [Google Scholar]
26. Leuchtmann A., Clay K. 1989b; Isozyme variation in the fungus Atkinsonella hypoxylon within and among populations of its host grasses. Canadian Journal of Botany 67:2600–2607
    [Google Scholar]
27. Matsumoto Y., Wickner R. B. 1991; Yeast 20S RNA replicon. Replication intermediates and encoded putative RNA polymerase. Journal of Biological Chemistry 266:12779–12783
    [Google Scholar]
28. Morris T. J., Dodds J. A. 1979; Isolation and analysis of doublestranded RNA from virus-infected plant and fungal tissue. Phytopathology 69:845–858
    [Google Scholar]
29. Nuss D. L., Dall D. J. 1990; Structural and functional properties of plant reovirus genomes. Advances in Virus Research 38:249–306
    [Google Scholar]
30. Oh C.-S., Carrington J. C. 1989; Identification of essential residues in potyvirus proteinase HC-Pro by site-directed mutagenesis. Virology 173:692–699
    [Google Scholar]
31. Poch O., Sauvageut I., Delarue M., Tordo N. 1989; Identification of four conserved motifs among RNA-dependent RNA polymerase encoding elements. EMBO Journal 8:3867–3874
    [Google Scholar]
32. Polashock J. J., Hillman B. I. 1994; A small mitochondrial double-stranded (ds) RNA element associated with a hypovirulent strain of the chestnut blight fungus and ancestrally related to yeast cytoplasmic T and W dsRNAs. Proceedings of the National Academy of Sciences, USA 91:8680–8684
    [Google Scholar]
33. Queen C., Korn L. J. 1984; A comprehensive sequence analysis program for the IBM personal computer. Nucleic Acids Research 12:581–599
    [Google Scholar]
34. Rodriguez-Cousino N., Esteban L. M., Esteban R. 1991; Molecular cloning and characterization of W double-stranded RNA, a linear molecule present in Saccharomyces cerevisiae. Journal of Biological Chemistry 266:12772–12778
    [Google Scholar]
35. Romanos M. A., Buck K. W., Rawlinson C. J. 1981; A satellite double-stranded RNA in a virus from Gaeumannomyces graminis. Journal of General Virology 57:375–383
    [Google Scholar]
36. Sanger F., Nicklen S., Coulson A. R. 1977; Sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences, USA 74:5463–5467
    [Google Scholar]
37. Schardl C. L., Liu J.-S., White J. F. Jr, Finkbl R. A., An Z., Siegel M. 1991; Molecular phylogenetic relationships of nonpathogenic grass mycosymbionts and clavicipitaceous plant pathogens. Plant Systematics and Evolution 178:27–41
    [Google Scholar]
38. Stoeckle M. Y., Shaw M. W., Choppin P. W. 1987; Segment-specific and common nucleotide sequences in the noncoding regions of influenza B virus genome RNAs. Proceedings of the National Academy of Sciences, USA 84:2703–2707
    [Google Scholar]
39. Tabor S., Richardson C. C. 1987; DNA sequence analysis with a modified bacteriophage T7 DNA polymerase. Proceedings of the National Academy of Sciences, USA 84:4767–4771
    [Google Scholar]
40. Tavantzis S. M., Bandy B. P. 1988; Properties of a mycovirus from Rhizoctonia solam and its virion-associated RNA polymerase. Journal of General Virology 69:1465–1477
    [Google Scholar]
41. Wickner R. B. 1992; Double-stranded and single-stranded RNA viruses of Saccharomyces cerevisiae. Annual Review of Microbiology 46:347–375
    [Google Scholar]
42. Wood H. A., Bozarth R. F. 1972; Properties of virus-like particles of Penicillium chrysogenunr. One double-stranded RNA molecule per particle. Virology 47:604–609
    [Google Scholar]
43. Xie W. S., Antoniw J. F., White R. F. 1993; Nucleotide sequence of beet cryptic virus 3 dsRNA2 which encodes a putative RNA-dependent RNA polymerase. Journal of General Virology 74:1467–1470
    [Google Scholar]