Whole-genome analysis of bovine rotavirus species C isolates obtained in Yamagata, Japan, 2003–2010

References

1. Adah M. I., Wade A., Oseto M., Kuzuya M., Taniguchi K. 2002; Detection of human group C rotaviruses in Nigeria and sequence analysis of their genes encoding VP4, VP6, and VP7 proteins. J Med Virol 66:269–275 [View Article][PubMed]
   [Google Scholar]
2. Bremont M., Juste-Lesage P., Chabanne-Vautherot D., Charpilienne A., Cohen J. 1992; Sequences of the four larger proteins of a porcine group C rotavirus and comparison with the equivalent group A rotavirus proteins. Virology 186:684–692 [View Article][PubMed]
   [Google Scholar]
3. Castello A. A., Argüelles M. H., Villegas G. A., Olthoff A., Glikmann G. 2002; Incidence and prevalence of human group C rotavirus infections in Argentina. J Med Virol 67:106–112 [View Article][PubMed]
   [Google Scholar]
4. Caul E. O., Ashley C. R., Darville J. M., Bridger J. C. 1990; Group C rotavirus associated with fatal enteritis in a family outbreak. J Med Virol 30:201–205 [View Article][PubMed]
   [Google Scholar]
5. Chang K. O., Nielsen P. R., Ward L. A., Saif L. J. 1999; Dual infection of gnotobiotic calves with bovine strains of group A and porcine-like group C rotaviruses influences pathogenesis of the group C rotavirus. J Virol 73:9284–9293[PubMed]
   [Google Scholar]
6. Chen Z., Lambden P. R., Lau J., Caul E. O., Clarke I. N. 2002; Human group C rotavirus: completion of the genome sequence and gene coding assignments of a non-cultivatable rotavirus. Virus Res 83:179–187 [View Article][PubMed]
   [Google Scholar]
7. Estes M. K., Kapikian A. Z. 2007; Rotaviruses. In Fields Virology, 5th edn. pp. 1917–1974 Edited by Knipe D. M., Howley P. M., Griffin D. E., Lamb R. A., Martin M. A., Roizman B., Straus S. E. Philadelphia: Lippincott, Williams & Wilkins;
   [Google Scholar]
8. Mackow E. R. 1995; Group B and C rotaviruses. In Infections of the Gastrointestinal Tract pp. 983–1008 Edited by Blaser M. J., Smith P. D., Ravdin J. I., Greenberg H. B., Guerrant R. L. New York: Raven Press;
   [Google Scholar]
9. Marthaler D., Rossow K., Culhane M., Collins J., Goyal S., Ciarlet M., Matthijnssens J. 2013; Identification, phylogenetic analysis and classification of porcine group C rotavirus VP7 sequences from the United States and Canada. Virology 446:189–198 [View Article][PubMed]
   [Google Scholar]
10. Matthijnssens J., Ciarlet M., Heiman E., Arijs I., Delbeke T., McDonald S. M., Palombo E. A., Iturriza-Gómara M., Maes P.other authors 2008a; Full genome-based classification of rotaviruses reveals a common origin between human Wa-like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82:3204–3219 [View Article][PubMed]
    [Google Scholar]
11. Matthijnssens J., Ciarlet M., Rahman M., Attoui H., Bányai K., Estes M. K., Gentsch J. R., Iturriza-Gómara M., Kirkwood C. D.other authors 2008b; Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Arch Virol 153:1621–1629 [View Article][PubMed]
    [Google Scholar]
12. Matthijnssens J., Ciarlet M., McDonald S. M., Attoui H., Bányai K., Brister J. R., Buesa J., Esona M. D., Estes M. K.other authors 2011; Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). Arch Virol 156:1397–1413 [View Article][PubMed]
    [Google Scholar]
13. Matthijnssens J., Otto P. H., Ciarlet M., Desselberger U., Van Ranst M., Johne R. 2012; VP6-sequence-based cutoff values as a criterion for rotavirus species demarcation. Arch Virol 157:1177–1182 [View Article][PubMed]
    [Google Scholar]
14. Mawatari T., Taneichi A., Kawagoe T., Hosokawa M., Togashi K., Tsunemitsu H. 2004; Detection of a bovine group C rotavirus from adult cows with diarrhea and reduced milk production. J Vet Med Sci 66:887–890 [View Article][PubMed]
    [Google Scholar]
15. Mwenda J. M., Peenze I., Omollo E., Galo M., Steele A. D. 2003; Human group C rotaviruses identified in Kenya. East Afr Med J 80:73–76[PubMed]
    [Google Scholar]
16. Nilsson M., Svenungsson B., Hedlund K. O., Uhnoo I., Lagergren A., Akre T., Svensson L. 2000; Incidence and genetic diversity of group C rotavirus among adults. J Infect Dis 182:678–684 [View Article][PubMed]
    [Google Scholar]
17. Peñaranda M. E., Cubitt W. D., Sinarachatanant P., Taylor D. N., Likanonsakul S., Saif L., Glass R. I. 1989; Group C rotavirus infections in patients with diarrhea in Thailand, Nepal, and England. J Infect Dis 160:392–397 [View Article][PubMed]
    [Google Scholar]
18. Qiao H., Nilsson M., Abreu E. R., Hedlund K. O., Johansen K., Zaori G., Svensson L. 1999; Viral diarrhea in children in Beijing, China. J Med Virol 57:390–396 [View Article][PubMed]
    [Google Scholar]
19. Rahman M., Banik S., Faruque A. S., Taniguchi K., Sack D. A., Van Ranst M., Azim T. 2005; Detection and characterization of human group C rotaviruses in Bangladesh. J Clin Microbiol 43:4460–4465 [View Article][PubMed]
    [Google Scholar]
20. Saif L. J., Bohl E. H., Theil K. W., Cross R. F., House J. A. 1980; Rotavirus-like, calicivirus-like, and 23-nm virus-like particles associated with diarrhea in young pigs. J Clin Microbiol 12:105–111[PubMed]
    [Google Scholar]
21. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425[PubMed]
    [Google Scholar]
22. Schnagl R. D., Boniface K., Cardwell P., McCarthy D., Ondracek C., Coulson B., Erlich J., Morey F. 2004; Incidence of group C human rotavirus in central Australia and sequence variation of the VP7 and VP4 genes. J Clin Microbiol 42:2127–2133 [View Article][PubMed]
    [Google Scholar]
23. Soma J., Tsunemitsu H., Miyamoto T., Suzuki G., Sasaki T., Suzuki T. 2013; Whole-genome analysis of two bovine rotavirus C strains: Shintoku and Toyama. J Gen Virol 94:128–135 [View Article][PubMed]
    [Google Scholar]
24. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. 2011; MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739 [View Article][PubMed]
    [Google Scholar]
25. Thompson J. D., Higgins D. G., Gibson T. J. 1994; CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680 [View Article][PubMed]
    [Google Scholar]
26. Trojnar E., Sachsenröder J., Twardziok S., Reetz J., Otto P. H., Johne R. 2013; Identification of an avian group A rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses. J Gen Virol 94:136–142 [View Article][PubMed]
    [Google Scholar]
27. Tsunemitsu H., Jiang B., Saif L. J. 1992; Detection of group C rotavirus antigens and antibodies in animals and humans by enzyme-linked immunosorbent assays. J Clin Microbiol 30:2129–2134[PubMed]
    [Google Scholar]
28. Tsunemitsu H., Jiang B., Saif L. J. 1996; Sequence comparison of the VP7 gene encoding the outer capsid glycoprotein among animal and human group C rotaviruses. Arch Virol 141:705–713 [View Article][PubMed]
    [Google Scholar]
29. Yamamoto D., Ghosh S., Kuzuya M., Wang Y. H., Zhou X., Chawla-Sarkar M., Paul S. K., Ishino M., Kobayashi N. 2011; Whole-genome characterization of human group C rotaviruses: identification of two lineages in the VP3 gene. J Gen Virol 92:361–369 [View Article][PubMed]
    [Google Scholar]
30. Yee E. L., Jiang B., Kendall R. S., Humphrey C., Glass R. I. 2006; Group C rotavirus in a pediatric kidney transplant patient with diarrhea. J Clin Virol 36:306–308 [View Article][PubMed]
    [Google Scholar]