Human immunodeficiency virus type 1 RNA populations in faeces with higher homology to intestinal populations than to blood populations

References

1. Barnett S. W., Barboza A., Wilcox C. M., Forsmark C. E., Levy J. A. 1991; Characterization of human immunodeficiency virus type 1 strains recovered from the bowel of infected individuals. Virology 182:802–809
   [Google Scholar]
2. Bartlett J. G., Belitsos P. C., Sears C. L. 1992; AIDS enteropathy. Clinical Infectious Diseases 15:726–735
   [Google Scholar]
3. Batman P. A., Miller A. R. O., Forster S. M., Harris J. R. W., Pinching A. J., Griffin G. E. 1989; Jejunal enteropathy associated with human immunodeficiency virus infection: quantitative histology. Journal of Clinical Pathology 42:275–281
   [Google Scholar]
4. Boom R., Sol C. J. A., Salimans M. M. M., Jansen C. L., Wertheim-van Dillen P. M. E., van der Noordaa J. 1990; Rapid and simple method for purification of nucleic acids. Journal of Clinical Microbiology 28:495–503
   [Google Scholar]
5. Boom R., Sol C. J. A., Heijtink R., Wertheim-van Dillen P. M. E., van der Noordaa J. 1991; Rapid purification of hepatitis B virus DNA from serum. Journal of Clinical Microbiology 29:1804–1811
   [Google Scholar]
6. Centers for Disease Control. 1987; Revision of the CDC surveillance case definition of acquired immunodeficiency syndrome. Morbidity and Mortality Weekly Report 36:3S–15S
   [Google Scholar]
7. Chesebro B., Wehrly K., Nishio J., Perryman S. 1992; Macrophagetropic human immunodeficiency virus isolates from different patients exhibit unusual V3 envelope sequence homogeneity in comparison with T-cell-tropic isolates: definition of critical amino acids involved in cell tropism. Journal of Virology 66:6547–6554
   [Google Scholar]
8. Clayton F., Reka S., Cronin W. J., Torlakovic E., Sigal S. H., Kotler D. P. 1992; Rectal mucosal pathology varies with human immunodeficiency virus antigen content and disease stage. Gastroenterology 103:919–933
   [Google Scholar]
9. Delassus S., Cheynier R., Wain-Hobson S. 1992; Nonhomogenous distribution of human immunodeficiency virus type 1 proviruses in the spleen. Journal of Virology 66:5642–5645
   [Google Scholar]
10. Dworkin B., Wormser G. P., Rosenthal W. S., Heier S. K., Braunstein M., Weiss L., Jankowski R., Levy D., Weiselberg S. 1985; Gastrointestinal manifestations of the acquired immunodeficiency syndrome: a review of 22 cases. American Journal of Gastroenterology 80:774–778
    [Google Scholar]
11. Felsenstein J. 1993 PHYLIP manual version 3.5 University Herbarium of the University of California at Berkeley:
    [Google Scholar]
12. Fox C. H., Kotler D., Tierney A., Wilson C. S., Fauci A. S. 1989; Detection of HIV-1 RNA in the lamina propria of patients with AIDS and gastrointestinal disease. Journal of Infectious Diseases 159:467–471
    [Google Scholar]
13. Gazzard B. G. 1992; Diarrhea in human immunodeficiency virus antibody-positive patients. Seminars in Liver Disease 12:154–166
    [Google Scholar]
14. Gillin J. S., Shike M., Alcock N., Urmacher C., Krown S., Kurtz R. C., Lightdale C. J., Winawer S. J. 1985; Malabsorption and mucosal abnormalities of the small intestine in the acquired immunodeficiency syndrome. Annals of Internal Medicine 102:619–622
    [Google Scholar]
15. Griffin G. E. 1990; Malabsorption, malnutrition and HIV disease. In Gastroenterological aspects of AIDS, Bailliere’s Clinical Gastroenterology pp 361–373 Edited by Gazzard B. G. London: Bailliere Tindall;
    [Google Scholar]
16. Heise C., Dandekar S., Kumar P., Duplantier R., Donovan R. M., Halsted C. H. 1991; Human immunodeficiency virus infection of enterocytes and mononuclear cells in human jejunal mucosa. Gastroenterology 100:1521–1527
    [Google Scholar]
17. Hwang S. S., Boyle T. J., Lyerly H. K., Cullen B. R. 1991; Identification of the envelope V3 loop as the primary determinant of cell tropism in HIV-1. Science 253:71–74
    [Google Scholar]
18. Jarry A., Cortez A., Rene E., Muzeau F., Brousse N. 1990; Infected cells and immune cells in the gastrointestinal tract of AIDS patients. An immunohistochemical study of 127 cases. Histopathology 16:133–140
    [Google Scholar]
19. Kamur S., Tamura K., Wei M. 1993 Molecular Evolutionary Genetics Analysis (MEGA), version 1.0 Institute of Molecular Evolutionary Genetics; Pennsylvania State University, University Park:
    [Google Scholar]
20. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111–120
    [Google Scholar]
21. Kotler D. P., Gaetz H. P., Lange M., Klein E. B., Holt P. R. 1984; Enteropathy associated with the acquired immunodeficiency syndrome. Annals of Internal Medicine 101:421–428
    [Google Scholar]
22. Kotler D. P., Reka S., Borcich A., Cronin W. J. 1991; Detection, localization and quantitation of HIV-associated antigens in intestinal biopsies from patients with HIV. American Journal of Pathology 139:823–830
    [Google Scholar]
23. Kotler D. P., Reka S., Clayton F. 1993; Intestinal mucosal inflammation associated with human immunodeficiency virus infection. Digestive Diseases and Sciences 38:1119–1127
    [Google Scholar]
24. Laughon B. E., Druckman D. A., Vernon A., Quinn T. C., Polk B. F., Modlin J. F., Yolken R. H., Bartlett J. G. 1988; Prevalence of enteric pathogens in homosexual men with and without acquired immunodeficiency syndrome. Gastroenterology 94:984–993
    [Google Scholar]
25. Layne S. P., Merges M. J., Dembo M., Spouge J. L., Conley S. R., Moore J. P., Raina J. L., Renz H., Gelderblom H. R., Nara P. L. 1992; Factors underlying spontaneous inactivation and susceptibility to neutralization of human immunodeficiency virus. Virology 189:695–714
    [Google Scholar]
26. Levy J. A., Margaretten W., Nelson J. 1989; Detection of HIV in enterochromaffin cells in the rectal mucosa of an AIDS patient. American Journal of Gastroenterology 84:787–789
    [Google Scholar]
27. Mathijs J. M., Hing M., Grierson J., Dwyer D. E., Goldschmidt C., Cooper D. A., Cunningham A. L. 1988; HIV infection of rectal mucosa. Lancet i:1111
    [Google Scholar]
28. Myers G., Rabson A. B., Berzofsky J. A., Smith T. F., Wong-Staal F. 1990; Human Retroviruses and AIDS. A Compilation and Analysis of Nucleic and Amino Acid Sequences Los Alamos: Theoretical Biology and Biophysics, Los Alamos National Laboratory;
    [Google Scholar]
29. Nelson J. A., Reynolds-Kohler C., Margaretten W., Wiley C. A., Reese C. E., Levy J. A. 1988; Human immunodeficiency virus detected in bowel epithelium from patients with gastrointestinal symptoms. Lancet i:259–262
    [Google Scholar]
30. Riecken E. O., Zeitz M., Ullrich R. 1990; Non-opportunistic causes of diarrhoea in HIV infection. In Gastroenterological Aspects of AIDS, Baillièrés Clinical Gastroenterology pp 385–403 Edited by Gazzard B. G. London: Bailliere Tindall;
    [Google Scholar]
31. Rodgers V. D., Fassett R., Kagnoff M. F. 1986; Abnormalities in intestinal mucosal T cells in homosexual populations including those with the Iymphadenopathy syndrome and acquired immunodeficiency syndrome. Gastroenterology 90:552–558
    [Google Scholar]
32. Shioda T., Levy J. A., Cheng-Mayer C. 1992; Small amino acid changes in the V3 hypervariable region of gpl20 can affect the T-cell-line and macrophage tropism of human immunodeficiency virus type 1. Proceedings of the National Academy of Sciences, USA 89:9434–9438
    [Google Scholar]
33. Ullrich R., Zeitz M., Heise W., L’Age M., Hoffken G., Riecken E. O. 1989; Small intestinal structure and function in patients infected with human immunodeficiency virus (HIV): evidence for HIV-induced enteropathy. Annals of Internal Medicine 111:15–21
    [Google Scholar]
34. Ullrich R., Zeitz M., Heise W., L’Age M., Ziegler K., Bergs C., Riecken E.-O. 1990; Mucosal atrophy is associated with loss of activated T cells in the duodenal mucosa of human immunodeficiency virus (HlV)-infected patients. Digestion 46: suppl 2302–307
    [Google Scholar]
35. Van’t Wout A. B., Kootstra N. A., Mulder-Kampinga G. A., Albrecht-Van Lent N., Scherpbier H. J., Veenstra J., Boer K., Coutinho R. A., Miedema F., Schuitemaker H. 1994; Macrophage-tropic variants initiate human immunodeficiency virus type 1 infection after sexual, parenteral, and vertical transmission. Journal of Clinical Investigation 94:2060–2067
    [Google Scholar]
36. van der Hoek L., Boom R., Goudsmit J., Snijders F., Sol C. J. A. 1995; Isolation of human immunodeficiency virus type 1 (HIV-1) RNA from feces by a simple method and difference between HIV-1 subpopulations in feces and serum. Journal of Clinical Microbiology 33:581–588
    [Google Scholar]
37. Westervelt P., Trowbridge D. B., Epstein L. G., Blumberg B. M., Li Y., Hahn B. H., Shaw G. M., Price R. W., Ratner L. 1992; Macrophage tropism determinants of human immunodeficiency virus type 1 in vivo . Journal of Virology 66:2577–2582
    [Google Scholar]
38. Yednock T. A., Rosen S. D. 1989; Lymphocyte homing. Advanced Immunology 44:313–378
    [Google Scholar]